Explore Workflows
View already parsed workflows here or click here to add your own
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functional analysis prediction with InterProScan
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Path: workflows/functional_analysis.cwl Branch/Commit ID: 0cd2d70 |
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MACE ChIP-exo peak caller workflow for single-end samples
This workflow execute peak caller and QC from ChIP-exo for single-end samples using MACE |
Path: workflows/ChIP-exo/peak-caller-MACE-SE.cwl Branch/Commit ID: master |
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adapter for sequence_align_and_tag
Some workflow engines won't stage files in our nested structure, so parse it out here |
Path: definitions/subworkflows/sequence_align_and_tag_adapter.cwl Branch/Commit ID: downsample_and_recall |
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workflow.cwl
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Path: flow_apollo2_data_processing/processing/workflow.cwl Branch/Commit ID: master |
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fail-unconnected.cwl
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Path: tests/fail-unconnected.cwl Branch/Commit ID: main |
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fasta2taxa-plot
Input is a fasta file with n>1 samples, with sample id as sequence identifier prefix, and a sample id file. The workflow calls open otus and assigns taxa using greengenes. The output are taxa plots. |
Path: CWL/Workflows/qiime/join-reads2plot.cwl Branch/Commit ID: master |
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steplevel-resreq.cwl
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Path: v1.0/v1.0/steplevel-resreq.cwl Branch/Commit ID: master |
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preprocessing.cwl
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Path: tiny/cwl/workflows/preprocessing.cwl Branch/Commit ID: master |
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lane_map_and_stats.cwl
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Path: cwls/tools/lane_map_and_stats.cwl Branch/Commit ID: dev |
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ChIPseq.cwl
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Path: CWL/workflows/ChIPseq.cwl Branch/Commit ID: master |
