Explore Workflows
View already parsed workflows here or click here to add your own
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bacteria-genome.cwl
DAT2-cwl bacteria genome data analysis workflow. see https://github.com/pitagora-network/DAT2-cwl/blob/main/workflow/bacteria-genome/README.md |
https://github.com/pitagora-network/DAT2-cwl.git
Path: workflow/bacteria-genome/bacteria-genome.cwl Branch/Commit ID: main |
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Raw sequence data to BQSR
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https://github.com/apaul7/cancer-genomics-workflow.git
Path: definitions/subworkflows/sequence_to_bqsr.cwl Branch/Commit ID: low-vaf |
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final-workflow.cwl
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https://github.com/nal-i5k/organism_onboarding.git
Path: final-workflow.cwl Branch/Commit ID: master |
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PGAP Pipeline
PGAP pipeline for external usage, powered via containers |
https://github.com/ncbi/pgap.git
Path: wf_common.cwl Branch/Commit ID: master |
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emblem_textures.cwl
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https://github.com/undu/stellaris-emblem-lab.git
Path: textures/emblem_textures.cwl Branch/Commit ID: master |
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portal-workflow.cwl
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https://github.com/mskcc/pluto-cwl.git
Path: cwl/portal-workflow.cwl Branch/Commit ID: master |
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Apply filters to VCF file
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https://github.com/ChrisMaherLab/PACT.git
Path: subworkflows/filter_vcf.cwl Branch/Commit ID: master |
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wf.cwl#VDJ_Analyze_Reads_IG.cwl
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https://github.com/aheinzel/tmp_rhapsody_for_cwl_vis.git
Path: wf.cwl Branch/Commit ID: main Packed ID: VDJ_Analyze_Reads_IG.cwl |
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oxog_varbam_annotate_wf.cwl
This workflow will run OxoG, variantbam, and annotate. Run this as `dockstore --script --debug workflow launch --descriptor cwl --local-entry --entry ./oxog_varbam_annotate_wf.cwl --json oxog_varbam_annotat_wf.input.json ` |
https://github.com/svonworl/oxog-dockstore-tools.git
Path: oxog_varbam_annotate_wf.cwl Branch/Commit ID: master |
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Salmon quantification, FASTQ -> H5AD count matrix
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https://github.com/hubmapconsortium/salmon-rnaseq.git
Path: steps/salmon-quantification.cwl Branch/Commit ID: f8ea70d |
