Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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Align reference proteins plane complete workflow
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https://github.com/ncbi/pgap.git
Path: protein_alignment/wf_protein_alignment.cwl Branch/Commit ID: 8e00678051e8e11fe2798175401bce04c7eeef19 |
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count-lines7-wf.cwl
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https://github.com/common-workflow-language/cwltool.git
Path: cwltool/schemas/v1.0/v1.0/count-lines7-wf.cwl Branch/Commit ID: e835bc0487fe42fb330b6222c9be65d18dd81ec9 |
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Generate genome index bowtie
Workflow makes indices for [bowtie](http://bowtie-bio.sourceforge.net/tutorial.shtml) v1.2.0 (12/30/2016). Executes `bowtie-index` to generate indices requires genome [FASTA](http://zhanglab.ccmb.med.umich.edu/FASTA/) file as input, returns results as a directory |
https://github.com/datirium/workflows.git
Path: workflows/bowtie-index.cwl Branch/Commit ID: e238d1756f1db35571e84d72e1699e5d1540f10c |
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BLAST against rRNA db
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https://github.com/ncbi/pgap.git
Path: bacterial_noncoding/wf_blastn.cwl Branch/Commit ID: 4ea5956bb97ea2eb6de124bc9b6a6a81a14fd2e7 |
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tindaisy.cwl
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https://github.com/ding-lab/TinDaisy.git
Path: cwl/workflows/tindaisy.cwl Branch/Commit ID: 64aa26178387585c8cdd4de27a4cdb244527dd0a |
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strelka workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/strelka_and_post_processing.cwl Branch/Commit ID: 0805e8e0d358136468e0a9f49e06005e41965adc |
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abundance
abundace profiles from annotated files, for protein and/or rna |
https://github.com/MG-RAST/pipeline.git
Path: CWL/Workflows/abundance.workflow.cwl Branch/Commit ID: 7797879b801042984b5ae651754815fc3f77ea41 |
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scatter-valuefrom-wf1.cwl
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https://github.com/common-workflow-language/cwltool.git
Path: cwltool/schemas/v1.0/v1.0/scatter-valuefrom-wf1.cwl Branch/Commit ID: 5ef2516220cd2ed327ba7966e7d812de969f4eea |
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PGAP Pipeline
PGAP pipeline for external usage, powered via containers |
https://github.com/ncbi/pgap.git
Path: wf_common.cwl Branch/Commit ID: 61e3752f1f5e2ee498fa024c235226f8580be942 |
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amplicon_metrics.cwl
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https://github.com/NCI-GDC/gdc-dnaseq-cwl.git
Path: workflows/bamfastq_align/amplicon_metrics.cwl Branch/Commit ID: 18affdd927cc388fab2c113dc2ec6df782af2a52 |
