Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph pipeline-pe-blacklist-removal.cwl

ATAC-seq pipeline - reads: PE - with blacklist removal

 https://github.com/alexbarrera/GGR-cwl.git

Path: v1.0/ATAC-seq_pipeline/pipeline-pe-blacklist-removal.cwl

Branch/Commit ID: master
workflow graph step-valuefrom3-wf.cwl

https://github.com/common-workflow-language/cwl-v1.1.git

Path: tests/step-valuefrom3-wf.cwl

Branch/Commit ID: master
workflow graph gdc_dnaseq_main_workflow.cwl

https://github.com/NCI-GDC/gdc-dnaseq-cwl.git

Path: subworkflows/main/gdc_dnaseq_main_workflow.cwl

Branch/Commit ID: master
workflow graph rnaseq_pipeline_fastq_checker-tar.cwl

https://github.com/heliumdatacommons/TOPMed_RNAseq_CWL.git

Path: workflow/checker-workflows/rnaseq_pipeline_fastq_checker-tar.cwl

Branch/Commit ID: master
workflow graph preprocess_vcf.cwl

This workflow will perform preprocessing steps on VCFs for the OxoG/Variantbam/Annotation workflow.

https://github.com/svonworl/oxog-dockstore-tools.git

Path: preprocess_vcf.cwl

Branch/Commit ID: master
workflow graph sequence (bam or fastqs) to trimmed fastqs and HISAT alignments

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/sequence_to_trimmed_fastq_and_hisat_alignments.cwl

Branch/Commit ID: master
workflow graph MoveData-workflow.cwl

https://github.com/NAL-i5K/Organism_Onboarding.git

Path: MoveData-workflow.cwl

Branch/Commit ID: master
workflow graph spurious_annot pass2

https://github.com/ncbi/pgap.git

Path: spurious_annot/wf_spurious_annot_pass2.cwl

Branch/Commit ID: master
workflow graph kmer_cache_store

https://github.com/ncbi/pgap.git

Path: task_types/tt_kmer_cache_store.cwl

Branch/Commit ID: af468ae34c82dc88399aeedfd8f12f1e87052367
workflow graph tRNA_selection.cwl

https://github.com/proteinswebteam/ebi-metagenomics-cwl.git

Path: tools/tRNA_selection.cwl

Branch/Commit ID: 5dc7c5c