Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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PGAP Pipeline, simple user input, PGAPX-134
PGAP pipeline for external usage, powered via containers, simple user input: (FASTA + yaml only, no template) |
https://github.com/ncbi/pgap.git
Path: pgap.cwl Branch/Commit ID: af78bfbc7625a817a2875e87c8ee267cf46b8c57 |
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ani_top_n
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https://github.com/ncbi/pgap.git
Path: task_types/tt_ani_top_n.cwl Branch/Commit ID: 001e133e0eedaf0dd8447e3f8b3cc898ec6e3e1d |
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running cellranger mkfastq and count
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/cellranger_mkfastq_and_count.cwl Branch/Commit ID: 54846feabbf008c1946db2a86d87252e0edd95b0 |
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cluster_blastp_wnode and gpx_qdump combined
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https://github.com/ncbi/pgap.git
Path: task_types/tt_cluster_and_qdump.cwl Branch/Commit ID: c28cfb9882dedd3c522160f933cff1050ae24100 |
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kmer_seq_entry_extract_wnode
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https://github.com/ncbi/pgap.git
Path: task_types/tt_kmer_seq_entry_extract_wnode.cwl Branch/Commit ID: 001e133e0eedaf0dd8447e3f8b3cc898ec6e3e1d |
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gcaccess_from_list
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https://github.com/ncbi/pgap.git
Path: task_types/tt_gcaccess_from_list.cwl Branch/Commit ID: 001e133e0eedaf0dd8447e3f8b3cc898ec6e3e1d |
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Run genomic CMsearch (Rfam rRNA)
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https://github.com/ncbi/pgap.git
Path: bacterial_ncrna/wf_gcmsearch.cwl Branch/Commit ID: af78bfbc7625a817a2875e87c8ee267cf46b8c57 |
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rw-distr.cwl
run scatter-gather for rw stage |
https://github.com/Sentieon/Sentieon-cwl.git
Path: stage/rw-distr.cwl Branch/Commit ID: d20382adfe7285cb517a25d95d2bcb7586546e23 |
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wffail.cwl
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https://github.com/common-workflow-language/cwltool.git
Path: tests/wf/wffail.cwl Branch/Commit ID: d7cd45f7072960d264962ecc5a04d7c219f65c06 |
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assm_assm_blastn_wnode
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https://github.com/ncbi/pgap.git
Path: task_types/tt_assm_assm_blastn_wnode.cwl Branch/Commit ID: 001e133e0eedaf0dd8447e3f8b3cc898ec6e3e1d |
