Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph Unaligned bam to sorted, markduped bam

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/align_sort_markdup.cwl

Branch/Commit ID: f77a920bcc73f6cfdb091eed75a149d02cd8a263
workflow graph harmonization_bwa_mem_prod.cwl

https://github.com/uc-cdis/genomel_pipelines.git

Path: genomel/cwl/workflows/harmonization/harmonization_bwa_mem_prod.cwl

Branch/Commit ID: 3b9d07ff1dd10e323fbba33026b888b3a269136b
workflow graph haplotypecaller.cwl

https://github.com/uc-cdis/genomel_pipelines.git

Path: genomel/cwl/workflows/variant_calling/haplotypecaller.cwl

Branch/Commit ID: 3b9d07ff1dd10e323fbba33026b888b3a269136b
workflow graph wffail.cwl

https://github.com/common-workflow-language/cwltool.git

Path: tests/wf/wffail.cwl

Branch/Commit ID: 4642316a30a95d4f3d135c18f98477886b160094
workflow graph workflow.cwl

https://github.com/nal-i5k/organism_onboarding.git

Path: flow_md5checksums/workflow.cwl

Branch/Commit ID: f6359e34e88cbd8b8a52de86d5377294411ce965
workflow graph genomel_individual_workflow.cwl

https://github.com/uc-cdis/genomel_pipelines.git

Path: genomel/genomel_individual_workflow.cwl

Branch/Commit ID: 3b9d07ff1dd10e323fbba33026b888b3a269136b
workflow graph workflow-blast-phobius.cwl

https://github.com/ebi-wp/webservice-cwl.git

Path: workflows/workflow-blast-phobius.cwl

Branch/Commit ID: b191ca3e4273b922bba6af4c1eacdaa86a5b62f4
workflow graph Subworkflow to allow calling different SV callers which require bam files as inputs

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/single_sample_sv_callers.cwl

Branch/Commit ID: 295e7b7f51727c0f2d6cc86ce817449b2e8dba3c
workflow graph count-lines2-wf.cwl

https://github.com/common-workflow-language/cwltool.git

Path: cwltool/schemas/v1.0/v1.0/count-lines2-wf.cwl

Branch/Commit ID: 4642316a30a95d4f3d135c18f98477886b160094
workflow graph wf_demultiplex_se.cwl

This workflow takes in single-end reads, and performs the following steps in order: demux_se.cwl (does not actually demux for single end, but mirrors the paired-end processing protocol)

https://github.com/YeoLab/eclip.git

Path: cwl/wf_demultiplex_se.cwl

Branch/Commit ID: 833a389b773e12492d316e61db802dd353404f4f