Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph EMG pipeline v3.0 (paired end version)

https://github.com/farahzkhan/ebi-metagenomics-cwl.git

Path: workflows/emg-pipeline-v3-paired.cwl

Branch/Commit ID: master
workflow graph binning.cwl

https://github.com/EBI-Metagenomics/CWL-binning.git

Path: workflows/binning.cwl

Branch/Commit ID: develop
workflow graph collate_unique_SSU_headers.cwl

https://github.com/proteinswebteam/ebi-metagenomics-cwl.git

Path: tools/collate_unique_SSU_headers.cwl

Branch/Commit ID: caea457
workflow graph rMATS_bam_packed.cwl

https://github.com/Xinglab/rmats-turbo.git

Path: cwl/rMATS_bam_packed.cwl

Branch/Commit ID: master
workflow graph basic_quote.cwl

https://github.com/common-workflow-lab/wdl-cwl-translator.git

Path: wdl2cwl/tests/cwl_files/basic_quote.cwl

Branch/Commit ID: main
workflow graph blast-reuse-image.cwl

https://github.com/betisb/inputparser.git

Path: cwl/blast-reuse-image.cwl

Branch/Commit ID: master
workflow graph ST520101.cwl

https://github.com/Marco-Salvi/cwl-ro-crate.git

Path: ST520101.cwl

Branch/Commit ID: main
workflow graph bulk_analysis.cwl

https://github.com/hubmapconsortium/sc-atac-seq-pipeline.git

Path: steps/bulk_analysis.cwl

Branch/Commit ID: 4b2af54
workflow graph qiime2 DADA2 detect/correct paired sequence data

Option 1: DADA2 from https://docs.qiime2.org/2018.4/tutorials/moving-pictures/

 https://github.com/Duke-GCB/bespin-cwl.git

Path: packed/qiime2-step2-dada2-paired.cwl

Branch/Commit ID: qiime2-workflow-paired

Packed ID: qiime2-03-dada2-paired.cwl
workflow graph scRNA-seq pipeline using Salmon and Alevin

https://github.com/hubmapconsortium/salmon-rnaseq.git

Path: pipeline.cwl

Branch/Commit ID: f8ea70d