Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	bam-bedgraph-bigwig.cwl	https://github.com/Barski-lab/ga4gh_challenge.git Path: subworkflows/bam-bedgraph-bigwig.cwl Branch/Commit ID: 24c7e3ca12f85415c41cec56595954043dd69c44
	module-1-scatter-chunk	https://github.com/mskcc/roslin-variant.git Path: setup/cwl/module-1.scatter.chunk.cwl Branch/Commit ID: 5b6fb984f3cf8e971d677c92a096cd437f34b787
	conditional_bamindex.cwl	https://github.com/NCI-GDC/gdc-dnaseq-cwl.git Path: workflows/bamfastq_align/conditional_bamindex.cwl Branch/Commit ID: 51d4f5c34d2cc0ed535e2382c4e458aeefd308de
	count-lines9-wf.cwl	https://github.com/common-workflow-language/common-workflow-language.git Path: v1.0/v1.0/count-lines9-wf.cwl Branch/Commit ID: 26c8b9ca0ffd37c5f76a46a36315f6fd944833fe
	WGS QC workflow	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/qc_wgs.cwl Branch/Commit ID: f401b02285f30de1c12ac2859134099fe04be33f
	module-5	https://github.com/mskcc/roslin-variant.git Path: setup/cwl/module-5.cwl Branch/Commit ID: 4e0f50f76ff0dfc9c5d9b4a92e4f4ba0fdc9f402
	hisat2-cufflinks_wf_pe.cwl	https://github.com/pitagora-network/pitagora-cwl.git Path: workflows/hisat2-cufflinks/paired_end/hisat2-cufflinks_wf_pe.cwl Branch/Commit ID: d20bf7da10148ffd0166bdaf1ec87a8570f7c1a4
	Bacterial Annotation, pass 1, genemark training, by HMMs (first pass)	https://github.com/ncbi/pgap.git Path: bacterial_annot/wf_bacterial_annot_pass1.cwl Branch/Commit ID: f390475a4e0898d4933f0a28dae278aa35803eb1
	biowardrobe_chipseq_se.cwl The workflow is used to run CHIP-Seq basic analysis with single-end input FASTQ file. In outputs it returns coordinate sorted BAM file alongside with index BAI file, quality statistics of the input FASTQ file, reads coverage in a form of bigWig file, peaks calling data in a form of narrowPeak or broadPeak files.	https://github.com/Barski-lab/ga4gh_challenge.git Path: biowardrobe_chipseq_se.cwl Branch/Commit ID: 24c7e3ca12f85415c41cec56595954043dd69c44
	integrity.cwl	https://github.com/NCI-GDC/gdc-dnaseq-cwl.git Path: workflows/dnaseq/integrity.cwl Branch/Commit ID: a3eec6c1081d28efe00a0d269fb41303acc4ccdd