Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	1st-workflow.cwl	https://github.com/common-workflow-language/cwltool.git Path: cwltool/schemas/v1.0/examples/1st-workflow.cwl Branch/Commit ID: 4642316a30a95d4f3d135c18f98477886b160094
	umi per-lane alignment subworkflow	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/umi_alignment.cwl Branch/Commit ID: cc3e7f1ccfdc7101c22bf88792608504eea7d53a
	1st-workflow.cwl	https://github.com/common-workflow-language/cwltool.git Path: cwltool/schemas/v1.0/examples/1st-workflow.cwl Branch/Commit ID: cf9d7cdefa6dfb3b678636da02bc55b6108c04ac
	adapter for sequence_align_and_tag Some workflow engines won't stage files in our nested structure, so parse it out here	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/sequence_align_and_tag_adapter.cwl Branch/Commit ID: efbbe5ed51f6ac583e87a348785c72818a33f56e
	exome alignment with qc	https://github.com/genome/analysis-workflows.git Path: definitions/pipelines/alignment_exome.cwl Branch/Commit ID: 28d1065759cbd389594ee33b41fd1103ced5436d
	umi per-lane alignment subworkflow	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/umi_alignment.cwl Branch/Commit ID: 789267ce0e3fed674ea5212a562315218fcf1bfc
	HS Metrics workflow	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/hs_metrics.cwl Branch/Commit ID: cc3e7f1ccfdc7101c22bf88792608504eea7d53a
	1st-workflow.cwl	https://github.com/common-workflow-language/user_guide.git Path: _includes/cwl/22-nested-workflows/1st-workflow.cwl Branch/Commit ID: fd3b9e9b55f11eeca62b49ae30b37aa653cbdc23
	Super-enhancer post ChIP-Seq analysis Super-enhancers, consist of clusters of enhancers that are densely occupied by the master regulators and Mediator. Super-enhancers differ from typical enhancers in size, transcription factor density and content, ability to activate transcription, and sensitivity to perturbation. Use to create stitched enhancers, and to separate super-enhancers from typical enhancers using sequencing data (.bam) given a file of previously identified constituent enhancers (.gff)	https://github.com/datirium/workflows.git Path: workflows/super-enhancer.cwl Branch/Commit ID: 12c29f88855329192bfff977f046990031f04931
	05-quantification-with-control.cwl ChIP-seq - Quantification - samples: treatment and control	https://github.com/alexbarrera/GGR-cwl.git Path: v1.0/ChIP-seq_pipeline/05-quantification-with-control.cwl Branch/Commit ID: 517487e59d240c197fc91f08d20dadca97a9e121