Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	harmonization_novoalign_multi_readgroup.cwl	https://github.com/uc-cdis/genomel_pipelines.git Path: genomel/cwl/workflows/harmonization/harmonization_novoalign_multi_readgroup.cwl Branch/Commit ID: 28bb82ba031041321ff9caa5c299ec1bb15d7471
	vardictGermlineVariantCaller.cwl	https://github.com/PMCC-BioinformaticsCore/janis-pipelines.git Path: janis_pipelines/wgs_germline/cwl/tools/vardictGermlineVariantCaller.cwl Branch/Commit ID: 536f8181dd3edaa7339483cc28610e3acde5d105
	GATK4_GermlineVariantCaller.cwl	https://github.com/PMCC-BioinformaticsCore/janis-pipelines.git Path: janis_pipelines/wgs_germline/cwl/tools/GATK4_GermlineVariantCaller.cwl Branch/Commit ID: 536f8181dd3edaa7339483cc28610e3acde5d105
	BwaAligner.cwl	https://github.com/PMCC-BioinformaticsCore/janis-pipelines.git Path: janis_pipelines/wgs_germline/cwl/tools/BwaAligner.cwl Branch/Commit ID: 536f8181dd3edaa7339483cc28610e3acde5d105
	strelkaGermlineVariantCaller.cwl	https://github.com/PMCC-BioinformaticsCore/janis-pipelines.git Path: janis_pipelines/wgs_germline/cwl/tools/strelkaGermlineVariantCaller.cwl Branch/Commit ID: 536f8181dd3edaa7339483cc28610e3acde5d105
	mergeAndMarkBams.cwl	https://github.com/PMCC-BioinformaticsCore/janis-pipelines.git Path: janis_pipelines/wgs_germline/cwl/tools/mergeAndMarkBams.cwl Branch/Commit ID: 536f8181dd3edaa7339483cc28610e3acde5d105
	kfdrc_process_se_readslist2.cwl	https://github.com/kids-first/kf-alignment-workflow.git Path: subworkflows/kfdrc_process_se_readslist2.cwl Branch/Commit ID: 09c05e788df9cd77cead39892fd02140faa765a8
	kfdrc_bam_to_gvcf.cwl	https://github.com/kids-first/kf-alignment-workflow.git Path: subworkflows/kfdrc_bam_to_gvcf.cwl Branch/Commit ID: 09c05e788df9cd77cead39892fd02140faa765a8
	Exome QC workflow	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/qc_exome.cwl Branch/Commit ID: b9e7392e72506cadd898a6ac4db330baf6535ab6
	kfdrc_process_bamlist.cwl	https://github.com/kids-first/kf-alignment-workflow.git Path: subworkflows/kfdrc_process_bamlist.cwl Branch/Commit ID: 09c05e788df9cd77cead39892fd02140faa765a8