Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	Bacterial Annotation, pass 1, genemark training, by HMMs (first pass)	https://github.com/ncbi/pgap.git Path: bacterial_annot/wf_bacterial_annot_pass1.cwl Branch/Commit ID: 485f0be56cea77bff62b797ae7eff422a990a92c
	adapter for sequence_align_and_tag Some workflow engines won't stage files in our nested structure, so parse it out here	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/sequence_align_and_tag_adapter.cwl Branch/Commit ID: 40097e1ed094c5b42b68f3db2ff2cbe78c182479
	exome alignment and germline variant detection	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/germline_detect_variants.cwl Branch/Commit ID: efbbe5ed51f6ac583e87a348785c72818a33f56e
	exome alignment with qc	https://github.com/genome/analysis-workflows.git Path: definitions/pipelines/alignment_exome.cwl Branch/Commit ID: efbbe5ed51f6ac583e87a348785c72818a33f56e
	bam_readcount workflow	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/bam_readcount.cwl Branch/Commit ID: dc2c019c1aa24cc01b451a0f048cf94a35f163c4
	secret_wf.cwl	https://github.com/common-workflow-language/cwltool.git Path: tests/wf/secret_wf.cwl Branch/Commit ID: 4642316a30a95d4f3d135c18f98477886b160094
	hmmsearch_wnode and gpx_qdump combined workflow to apply scatter/gather	https://github.com/ncbi/pgap.git Path: task_types/tt_hmmsearch_wnode_plus_qdump.cwl Branch/Commit ID: 16d1198871195e2229fd44dd0ad94a4ed6a87caf
	genomics-workspace.cwl	https://github.com/NAL-i5K/Organism_Onboarding.git Path: flow_genomicsWorkspace/genomics-workspace.cwl Branch/Commit ID: a6641911a841296c2853a6ddcb2357c0201c6b85
	Detect DoCM variants	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/docm_germline.cwl Branch/Commit ID: 25aa4788dd4efb1cc8ed6f609cb7803896e4d28d
	workflow.cwl	https://github.com/NAL-i5K/Organism_Onboarding.git Path: flow_apollo2_data_processing/processing/workflow.cwl Branch/Commit ID: a6641911a841296c2853a6ddcb2357c0201c6b85