Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph Raw sequence data to BQSR

https://github.com/litd/analysis-workflows.git

Path: definitions/subworkflows/sequence_to_bqsr.cwl

Branch/Commit ID: 193b8de694f262ad55c7635a603c20c124748583
workflow graph kmer_top_n_extract

https://github.com/ncbi/pgap.git

Path: task_types/tt_kmer_top_n_extract.cwl

Branch/Commit ID: 6ac47e5703d8c8cdac698de91143829b3911e9b2
workflow graph phase VCF

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/phase_vcf.cwl

Branch/Commit ID: ac87e0584685fe04e4010ecd77ae4f055f21d788
workflow graph step-valuefrom-wf.cwl

https://github.com/common-workflow-language/cwltool.git

Path: cwltool/schemas/v1.0/v1.0/step-valuefrom-wf.cwl

Branch/Commit ID: 520acbfb82455c4bdabd5f2ea24842804e1c9f58
workflow graph mergeAndMarkBams_4_1_3.cwl

https://github.com/PMCC-BioinformaticsCore/janis-pipelines.git

Path: janis_pipelines/wgs_somatic/cwl/tools/mergeAndMarkBams_4_1_3.cwl

Branch/Commit ID: e6a35d208452fb00c25c588cc25d8ea4530a29ce
workflow graph find downloadable files in zenodo community

For a given Zenodo community, retrieve a list of all its downloadable files

https://github.com/stain/ro-index-paper.git

Path: code/data-gathering/workflows/zenodo-community-links.cwl

Branch/Commit ID: b43b2bf099406a606f1a873baa3452ec8888c7dd
workflow graph varscan somatic workflow

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/varscan.cwl

Branch/Commit ID: e8b7759826df40b8bb821b40b15aea960a4951c4
workflow graph fastqtosam_pe.cwl

https://github.com/NCI-GDC/gdc-dnaseq-cwl.git

Path: workflows/fastqtosam/fastqtosam_pe.cwl

Branch/Commit ID: 18affdd927cc388fab2c113dc2ec6df782af2a52
workflow graph transcriptome-annotation.cwl

https://github.com/ncbi/cwl-ngs-workflows-cbb.git

Path: workflows/Annotation/transcriptome-annotation.cwl

Branch/Commit ID: de6380d83f9209e95559e66cf64ded3bf0e410ea
workflow graph extract_readgroup_fastq_pe_http.cwl

https://github.com/nci-gdc/gdc-dnaseq-cwl.git

Path: workflows/bamfastq_align/extract_readgroup_fastq_pe_http.cwl

Branch/Commit ID: 18affdd927cc388fab2c113dc2ec6df782af2a52