Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	revsort.cwl Reverse the lines in a document, then sort those lines.	https://github.com/common-workflow-language/cwl-v1.1.git Path: tests/revsort.cwl Branch/Commit ID: a22b7580c6b50e77c0a181ca59d3828dd5c69143
	exome alignment and germline variant detection	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/germline_detect_variants.cwl Branch/Commit ID: 2979b565f88ceebca934611adbf3fb8cefd65a19
	kfdrc_process_se_readslist2.cwl	https://github.com/kids-first/kf-alignment-workflow.git Path: subworkflows/kfdrc_process_se_readslist2.cwl Branch/Commit ID: 105340db0e99918fd7e8a8e14f1cde3022b44653
	Scattered variant calling workflow	https://github.com/arvados/arvados-tutorial.git Path: WGS-processing/cwl/helper/scatter-gatk-wf-with-interval.cwl Branch/Commit ID: c1a36dfcadbbdc8fc3b7c7732cb2dff895a4e8ee
	Detect Variants workflow	https://github.com/genome/analysis-workflows.git Path: definitions/pipelines/detect_variants_mouse.cwl Branch/Commit ID: 8dc462a7d9ba1479f764682af99c69d8574cb3dc
	somatic_exome: exome alignment and somatic variant detection somatic_exome is designed to perform processing of mutant/wildtype H.sapiens exome sequencing data. It features BQSR corrected alignments, 4 caller variant detection, and vep style annotations. Structural variants are detected via manta and cnvkit. In addition QC metrics are run, including somalier concordance metrics. example input file = analysis_workflows/example_data/somatic_exome.yaml	https://github.com/genome/analysis-workflows.git Path: definitions/pipelines/somatic_exome.cwl Branch/Commit ID: f0cdc773e31e4aa116838e8aba4954c31bd3d68b
	bacterial_screening.cwl	https://github.com/ncbi/pgap.git Path: vecscreen/bacterial_screening.cwl Branch/Commit ID: 6fad27f92dd604eca0e341178f594a560d70953b
	exome alignment and somatic variant detection	https://github.com/genome/analysis-workflows.git Path: definitions/pipelines/somatic_exome.cwl Branch/Commit ID: 1585504ccffafac53b1594349ed934f45206ee2b
	wgs alignment and germline variant detection	https://github.com/genome/analysis-workflows.git Path: definitions/pipelines/germline_wgs.cwl Branch/Commit ID: f0cdc773e31e4aa116838e8aba4954c31bd3d68b
	exome alignment and germline variant detection	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/germline_detect_variants.cwl Branch/Commit ID: 3f3b186da9bf82a5e2ae74ba27aef35a46174ebe