Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	workflow.cwl	https://github.com/NAL-i5K/Organism_Onboarding.git Path: flow_create_genomics-workspace_yml/flow_create_yml/workflow.cwl Branch/Commit ID: 39b1d1a39a2ccdadd52db15b41422ecccc66e605
	exome alignment and germline variant detection	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/germline_detect_variants.cwl Branch/Commit ID: f77a920bcc73f6cfdb091eed75a149d02cd8a263
	Immunotherapy Workflow	https://github.com/genome/analysis-workflows.git Path: definitions/pipelines/immuno.cwl Branch/Commit ID: f77a920bcc73f6cfdb091eed75a149d02cd8a263
	02-trim-se.cwl ATAC-seq 02 trimming - reads: SE	https://github.com/alexbarrera/GGR-cwl.git Path: v1.0/ATAC-seq_pipeline/02-trim-se.cwl Branch/Commit ID: 4e568335133405d28f4b73ae11e7f51f2900dfa3
	Tumor-Only Detect Variants workflow	https://github.com/genome/analysis-workflows.git Path: definitions/pipelines/tumor_only_detect_variants.cwl Branch/Commit ID: 789267ce0e3fed674ea5212a562315218fcf1bfc
	somatic_exome: exome alignment and somatic variant detection somatic_exome is designed to perform processing of mutant/wildtype H.sapiens exome sequencing data. It features BQSR corrected alignments, 4 caller variant detection, and vep style annotations. Structural variants are detected via manta and cnvkit. In addition QC metrics are run, including somalier concordance metrics. example input file = analysis_workflows/example_data/somatic_exome.yaml	https://github.com/genome/analysis-workflows.git Path: definitions/pipelines/somatic_exome.cwl Branch/Commit ID: 789267ce0e3fed674ea5212a562315218fcf1bfc
	exome alignment and germline variant detection	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/germline_detect_variants.cwl Branch/Commit ID: 3034168d652bfa930ba09af20e473a4564a8010d
	exome alignment and somatic variant detection	https://github.com/genome/analysis-workflows.git Path: definitions/pipelines/somatic_exome.cwl Branch/Commit ID: f77a920bcc73f6cfdb091eed75a149d02cd8a263
	Subworkflow to allow calling cnvkit with cram instead of bam files	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/cram_to_cnvkit.cwl Branch/Commit ID: 0c4855bf23622828413ecb09dd30754691c28014
	WGS QC workflow	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/qc_wgs.cwl Branch/Commit ID: 3a287b7cb6162cdea79865235d224fea45963d87