Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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rnaediting2strands.workflow.cwl
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https://github.com/YeoLab/sailor.git
Path: cwl/rnaediting2strands.workflow.cwl Branch/Commit ID: master |
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transcriptome_annotation.cwl
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https://github.com/ncbi/cloud-transcriptome-annotation.git
Path: bin/cwl-ngs-workflows-cbb/workflows/Annotation/transcriptome_annotation.cwl Branch/Commit ID: master |
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final_filtering
Final filtering |
https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git
Path: structuralvariants/cwl/subworkflows/final_filtering.cwl Branch/Commit ID: 1.0.6 |
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filter-pcr-artifacts.cwl
DNase-seq - map - Filter PCR Artifacts |
https://github.com/alexbarrera/GGR-cwl.git
Path: v1.0/map/filter-pcr-artifacts.cwl Branch/Commit ID: v1.0 |
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BD Rhapsody™ WTA Analysis Pipeline
The BD Rhapsody™ WTA Analysis Pipeline is used to create sequencing libraries from single cell transcriptomes without having to specify a targeted panel. After sequencing, the analysis pipeline takes the FASTQ files, a reference genome file and a transcriptome annotation file for gene alignment. The pipeline generates molecular counts per cell, read counts per cell, metrics, and an alignment file. |
https://github.com/longbow0/cwl.git
Path: v1.8/rhapsody_wta_1.8.cwl Branch/Commit ID: master Packed ID: main |
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inp_update_wf.cwl
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https://github.com/common-workflow-language/cwl-v1.1.git
Path: tests/inp_update_wf.cwl Branch/Commit ID: master |
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pindel parallel workflow
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https://github.com/fgomez02/analysis-workflows.git
Path: definitions/subworkflows/pindel.cwl Branch/Commit ID: No_filters_detect_variants |
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EMG QC workflow, (paired end version). Benchmarking with MG-RAST expt.
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https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: workflows/emg-qc-paired.cwl Branch/Commit ID: 1b0851e |
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chksum_seqval_wf_interleaved_fq.cwl
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https://github.com/cancerit/workflow-seq-import.git
Path: cwls/chksum_seqval_wf_interleaved_fq.cwl Branch/Commit ID: 0.4.0 |
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Create Genomic Collection for Bacterial Pipeline
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https://github.com/ncbi/pgap.git
Path: genomic_source/wf_genomic_source.cwl Branch/Commit ID: 4ab36e0fe1b0ab18cad9d8f1c1f806ec316d7734 |
