Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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metrics.cwl
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https://github.com/nci-gdc/gdc-dnaseq-cwl.git
Path: workflows/mirnaseq/metrics.cwl Branch/Commit ID: dd7f86b3cc10eb1cda07dc2fc279ba2529c8ad61 |
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umi duplex alignment fastq workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/umi_duplex_alignment.cwl Branch/Commit ID: 0c4855bf23622828413ecb09dd30754691c28014 |
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BLASTP, parse, dump FASTA
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https://github.com/ncbi/cwl-demos.git
Path: blast-pipelines/simple_three_step.cwl Branch/Commit ID: 8c1da0a9846a9c06e19461dc05854260bfbb0d84 |
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fastqtosam_se.cwl
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https://github.com/NCI-GDC/gdc-dnaseq-cwl.git
Path: workflows/fastqtosam/fastqtosam_se.cwl Branch/Commit ID: 98af742f0b342b731766bc975b95ee7cc1f90fd2 |
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exome alignment and germline variant detection
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/germline_detect_variants.cwl Branch/Commit ID: 0c4855bf23622828413ecb09dd30754691c28014 |
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process VCF workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/strelka_process_vcf.cwl Branch/Commit ID: 5c49c5a53259d4c88a02750f1a16a3c02d711115 |
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Per-chromosome pindel
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/pindel_cat.cwl Branch/Commit ID: 5c49c5a53259d4c88a02750f1a16a3c02d711115 |
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mirna_profiling.cwl
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https://github.com/NCI-GDC/gdc-dnaseq-cwl.git
Path: workflows/mirnaseq/mirna_profiling.cwl Branch/Commit ID: 98af742f0b342b731766bc975b95ee7cc1f90fd2 |
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varscan somatic workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/varscan.cwl Branch/Commit ID: 5c49c5a53259d4c88a02750f1a16a3c02d711115 |
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extract_readgroups_bam.cwl
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https://github.com/NCI-GDC/gdc-dnaseq-cwl.git
Path: workflows/bamfastq_align/extract_readgroups_bam.cwl Branch/Commit ID: 98af742f0b342b731766bc975b95ee7cc1f90fd2 |
