Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	checker-workflow-wrapping-tool.cwl This demonstrates how to wrap a \"real\" tool with a checker workflow that runs both the tool and a tool that performs verification of results	https://github.com/dockstore-testing/md5sum-checker.git Path: checker-workflow-wrapping-tool.cwl Branch/Commit ID: f7927a52c0583a0bb96ec23f0509683ea7f6cd38
	trim_and_map.cwl	https://github.com/CompEpigen/ChIPseq_workflows.git Path: CWL/workflow_modules/trim_and_map.cwl Branch/Commit ID: 8a5fb273ee0f55c4282dcc7e41502838eaae606e
	protein_extract	https://github.com/ncbi/pgap.git Path: progs/protein_extract.cwl Branch/Commit ID: 48381989cb983567ed936fde632714933df65350
	BLAST against rRNA db	https://github.com/ncbi/pgap.git Path: bacterial_noncoding/wf_blastn.cwl Branch/Commit ID: 02816f0d66e36c8eeba02d211cc90e36bf1c9df5
	count-lines4-wf.cwl	https://github.com/common-workflow-language/cwltool.git Path: cwltool/schemas/v1.0/v1.0/count-lines4-wf.cwl Branch/Commit ID: 0b3846fbf866584870a0b1ce902b5574f549dfee
	Run tRNAScan	https://github.com/ncbi/pgap.git Path: bacterial_trna/wf_trnascan.cwl Branch/Commit ID: f76a7f4a81ef4e60fa9a3964445162c92bf3d57c
	count-lines4-wf.cwl	https://github.com/common-workflow-language/cwltool.git Path: cwltool/schemas/v1.0/v1.0/count-lines4-wf.cwl Branch/Commit ID: 4642316a30a95d4f3d135c18f98477886b160094
	scRNA-seq pipeline using Salmon and Alevin	https://github.com/hubmapconsortium/salmon-rnaseq.git Path: pipeline.cwl Branch/Commit ID: 1d99c4a59d4502305e8dfe4cf4fe3211a57d0eef
	bam to trimmed fastqs and biscuit alignments	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/bam_to_trimmed_fastq_and_biscuit_alignments.cwl Branch/Commit ID: f77a920bcc73f6cfdb091eed75a149d02cd8a263
	PGAP Pipeline PGAP pipeline for external usage, powered via containers	https://github.com/ncbi/pgap.git Path: wf_common.cwl Branch/Commit ID: bb2f26dfe630179737ec2ff08a8614f1f47abcaf