Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	exome alignment with qc	https://github.com/genome/analysis-workflows.git Path: definitions/pipelines/alignment_exome.cwl Branch/Commit ID: 3a822294da63b4e19446a285e2fef075e23cf3d0
	gp_makeblastdb	https://github.com/ncbi/pgap.git Path: progs/gp_makeblastdb.cwl Branch/Commit ID: 6fad27f92dd604eca0e341178f594a560d70953b
	BLAST against rRNA db	https://github.com/ncbi/pgap.git Path: bacterial_noncoding/wf_blastn.cwl Branch/Commit ID: 0bc1c33a2293e054ad00974971edc79c13252cc7
	Detect DoCM variants	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/docm_germline.cwl Branch/Commit ID: f77a920bcc73f6cfdb091eed75a149d02cd8a263
	Filter Protein Seeds I; Find ProSplign Alignments I	https://github.com/ncbi/pgap.git Path: protein_alignment/wf_compart_filter_prosplign.cwl Branch/Commit ID: bb2f26dfe630179737ec2ff08a8614f1f47abcaf
	PGAP Pipeline PGAP pipeline for external usage, powered via containers	https://github.com/ncbi/pgap.git Path: wf_common.cwl Branch/Commit ID: 9144d08fa7f4e852498761481dceab477167fa65
	spurious_annot pass2	https://github.com/ncbi/pgap.git Path: spurious_annot/wf_spurious_annot_pass2.cwl Branch/Commit ID: 6fad27f92dd604eca0e341178f594a560d70953b
	scatter GATK HaplotypeCaller over intervals	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/gatk_haplotypecaller_iterator.cwl Branch/Commit ID: 789267ce0e3fed674ea5212a562315218fcf1bfc
	bam to trimmed fastqs and HISAT alignments	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/bam_to_trimmed_fastq_and_hisat_alignments.cwl Branch/Commit ID: f77a920bcc73f6cfdb091eed75a149d02cd8a263
	transform.cwl	https://github.com/NCI-GDC/gdc-dnaseq-cwl.git Path: workflows/bamfastq_align/transform.cwl Branch/Commit ID: 18affdd927cc388fab2c113dc2ec6df782af2a52