Explore Workflows

RNA-seq 04 quantification

https://github.com/alexbarrera/GGR-cwl.git

Path: v1.0/RNA-seq_pipeline/04-quantification-pe-stranded.cwl

Branch/Commit ID: master

This workflow compute library complexity

https://github.com/ncbi/cwl-ngs-workflows-cbb.git

Path: workflows/File-formats/bedtools-bam-pbc.cwl

Branch/Commit ID: master

Feature expression merge - combines feature expression from several experiments ========================================================================= Workflows merges RPKM (by default) gene expression from several experiments based on the values from GeneId, Chrom, TxStart, TxEnd and Strand columns (by default). Reported unique columns are renamed based on the experiments names.

https://github.com/datirium/workflows.git

Path: workflows/feature-merge.cwl

Branch/Commit ID: master

https://github.com/Gibbsdavidl/CWL_scatter_example.git

Path: pipeline_step4.cwl

Branch/Commit ID: master

Workflow to convert a maf file into a vcf.gz with .tbi index

https://github.com/mskcc/pluto-cwl.git

Path: cwl/maf2vcf_gz_workflow.cwl

Branch/Commit ID: master

https://github.com/common-workflow-language/cwltool.git

Path: tests/wf/count-lines1-wf.cwl

Branch/Commit ID: main

Run metrics workflow

https://github.com/Sentieon/Sentieon-cwl.git

Path: stage/metrics-flow.cwl

Branch/Commit ID: master

https://github.com/uc-cdis/genomel_pipelines.git

Path: genomel/cwl/workflows/harmonization/harmonization_novoalign.cwl

Branch/Commit ID: master

https://github.com/mr-c/stellaris-emblem-lab.git

Path: textures/texture_emblem.cwl

Branch/Commit ID: cwl

https://github.com/ddbj/human-reseq.git

Path: Workflows/fastqPE2bam.cwl

Branch/Commit ID: master