Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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alignment_workflow_md5checker.cwl
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https://github.com/DataBiosphere/topmed-workflows.git
Path: aligner/topmed-cwl/workflow/alignment_workflow_md5checker.cwl Branch/Commit ID: develop |
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tt_fscr_calls_pass1
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https://github.com/ncbi/pgap.git
Path: task_types/tt_fscr_calls_pass1.cwl Branch/Commit ID: dev |
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Subworkflow for Annotation
\"Main workflow for Metagenome and Metatranscriptome Annotation related CWL file: ./Tools/00_fastp.cwl ./Tools/05_bwa_mem_index.cwl ./Tools/13_subread.cwl ./Workflow/annotation_sw.cwl ./Workflow/megahit_prodigal_sw.cwl ./Workflow/metagenomic_contig_mapping_sw.cwl\" |
https://github.com/RyoMameda/workflow_cwl.git
Path: Workflow/main_w.cwl Branch/Commit ID: main |
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EMG pipeline v3.0 (paired end version)
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https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: workflows/emg-pipeline-v3-paired.cwl Branch/Commit ID: 1b0851e |
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Prepare user input
Prepare user input for NCBI-PGAP pipeline |
https://github.com/ncbi/pgap.git
Path: prepare_user_input2.cwl Branch/Commit ID: master |
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checkm
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https://github.com/ncbi/pgap.git
Path: checkm/wf_checkm.cwl Branch/Commit ID: master |
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816_wf.cwl
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https://github.com/common-workflow-language/cwltool.git
Path: tests/wf/816_wf.cwl Branch/Commit ID: main |
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count-lines10-wf.cwl
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https://github.com/common-workflow-language/cwl-v1.1.git
Path: tests/count-lines10-wf.cwl Branch/Commit ID: main |
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Whole Exome Sequencing
Whole Exome Sequence analysis using GATK best practices - Germline SNP & Indel Discovery |
https://github.com/Duke-GCB/bespin-cwl.git
Path: packed/exomeseq.cwl Branch/Commit ID: qiime2-workflow-paired Packed ID: main |
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03-map-se-blacklist-removal.cwl
ATAC-seq 03 mapping - reads: SE - blacklist removal |
https://github.com/Duke-GCB/GGR-cwl.git
Path: v1.0/ATAC-seq_pipeline/03-map-se-blacklist-removal.cwl Branch/Commit ID: master |
