Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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Bacterial Annotation, pass 1, genemark training, by HMMs (first pass)
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https://github.com/ncbi/pgap.git
Path: bacterial_annot/wf_bacterial_annot_pass1.cwl Branch/Commit ID: 29deae89a9898bb4dcfc27b7391b7d5067e65068 |
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Run genomic CMsearch (5S rRNA)
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https://github.com/ncbi/pgap.git
Path: bacterial_noncoding/wf_gcmsearch.cwl Branch/Commit ID: f390475a4e0898d4933f0a28dae278aa35803eb1 |
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varscan somatic workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/varscan.cwl Branch/Commit ID: 67f56d3b9c70ad56019ed8aa8d50a128e02be43b |
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tt_hmmsearch_wnode.cwl
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https://github.com/ncbi/pgap.git
Path: task_types/tt_hmmsearch_wnode.cwl Branch/Commit ID: 29deae89a9898bb4dcfc27b7391b7d5067e65068 |
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protein_extract
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https://github.com/ncbi/pgap.git
Path: progs/protein_extract.cwl Branch/Commit ID: 29deae89a9898bb4dcfc27b7391b7d5067e65068 |
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Preprocess fastq
Remove and trim low quality reads from fastq files. Return fasta files with reads passed and reads removed. |
https://github.com/MG-RAST/pipeline.git
Path: CWL/Workflows/preprocess-fastq.workflow.cwl Branch/Commit ID: 4e4d2e674bde612f98f2b0370445f8b2a47587df |
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bgzip and index VCF
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/bgzip_and_index.cwl Branch/Commit ID: 67f56d3b9c70ad56019ed8aa8d50a128e02be43b |
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module-2
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https://github.com/mskcc/roslin-variant.git
Path: setup/cwl/module-2.cwl Branch/Commit ID: 5b6fb984f3cf8e971d677c92a096cd437f34b787 |
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Exome QC workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/qc_exome.cwl Branch/Commit ID: 641bdeffd942f5121e19626a094c8633386ad546 |
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Seed Search Compartments
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https://github.com/ncbi/pgap.git
Path: protein_alignment/wf_seed.cwl Branch/Commit ID: 23f0ee7a36649ab37cabdd9277b7c82d098be79c |
