Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	Filter Protein Alignments I	https://github.com/ncbi/pgap.git Path: protein_alignment/wf_align_filter.cwl Branch/Commit ID: 9e43bc5cff985574e1f8135d4c50b5a347517c9e
	trnascan_wnode and gpx_qdump combined	https://github.com/ncbi/pgap.git Path: bacterial_trna/wf_scan_and_dump.cwl Branch/Commit ID: 9e43bc5cff985574e1f8135d4c50b5a347517c9e
	Run genomic CMsearch (5S rRNA)	https://github.com/ncbi/pgap.git Path: bacterial_noncoding/wf_gcmsearch.cwl Branch/Commit ID: 9e43bc5cff985574e1f8135d4c50b5a347517c9e
	BLAST against rRNA db	https://github.com/ncbi/pgap.git Path: bacterial_noncoding/wf_blastn.cwl Branch/Commit ID: 9e43bc5cff985574e1f8135d4c50b5a347517c9e
	protein_extract	https://github.com/ncbi/pgap.git Path: progs/protein_extract.cwl Branch/Commit ID: 9e43bc5cff985574e1f8135d4c50b5a347517c9e
	Prepare user input Prepare user input for NCBI-PGAP pipeline	https://github.com/ncbi/pgap.git Path: prepare_user_input2.cwl Branch/Commit ID: 29deae89a9898bb4dcfc27b7391b7d5067e65068
	Subworkflow to allow calling different SV callers which require bam files as inputs	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/single_sample_sv_callers.cwl Branch/Commit ID: 27aa22e6f5d2fca75abca42d52867259fd0725b9
	wf-alignment.cwl	https://github.com/bcbio/bcbio_validation_workflows.git Path: wes-agha-test/wes_chr21_test-workflow-arvados/wf-alignment.cwl Branch/Commit ID: a297e87e014de998b8df9c90700c29173ec09932
	extract_readgroups_bam_http.cwl	https://github.com/nci-gdc/gdc-dnaseq-cwl.git Path: workflows/bamfastq_align/extract_readgroups_bam_http.cwl Branch/Commit ID: a3eec6c1081d28efe00a0d269fb41303acc4ccdd
	wgs alignment with qc	https://github.com/genome/analysis-workflows.git Path: definitions/pipelines/wgs_alignment.cwl Branch/Commit ID: 27aa22e6f5d2fca75abca42d52867259fd0725b9