Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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Merge, annotate, and generate a TSV for SVs
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/merge_svs.cwl Branch/Commit ID: 3034168d652bfa930ba09af20e473a4564a8010d |
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alignment workflow
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https://github.com/griffithlab/pmbio.org.git
Path: assets/CWL/workflow.cwl Branch/Commit ID: 64f617355281775f14598424622a3d0e4be06a7b |
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Per-region pindel
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/pindel_cat.cwl Branch/Commit ID: f77a920bcc73f6cfdb091eed75a149d02cd8a263 |
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Execute CRISPR
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https://github.com/ncbi/pgap.git
Path: bacterial_mobile_elem/wf_bacterial_mobile_elem.cwl Branch/Commit ID: 02816f0d66e36c8eeba02d211cc90e36bf1c9df5 |
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Align reference proteins plane complete workflow
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https://github.com/ncbi/pgap.git
Path: protein_alignment/wf_protein_alignment.cwl Branch/Commit ID: 02816f0d66e36c8eeba02d211cc90e36bf1c9df5 |
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bams2gvcf.woBQSR_female.cwl
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https://github.com/ddbj/human-reseq.git
Path: Workflows/bams2gvcf.woBQSR_female.cwl Branch/Commit ID: a670d65837cc8f306096b5e5fde909192ba095ca |
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mutect panel-of-normals workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/panel_of_normals.cwl Branch/Commit ID: 789267ce0e3fed674ea5212a562315218fcf1bfc |
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CRAM_md5sum_checker_wrapper.cwl
This wraps the md5sum tool with a checker workflow that runs both the tool and a tool that performs verification of results |
https://github.com/DataBiosphere/toolbox.git
Path: CRAM-no-header-md5sum/CRAM_md5sum_checker_wrapper.cwl Branch/Commit ID: c61af852a472aacae54f6df1e209e5ddf3c79db1 |
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PGAP Pipeline
PGAP pipeline for external usage, powered via containers |
https://github.com/ncbi/pgap.git
Path: wf_common.cwl Branch/Commit ID: 0bc1c33a2293e054ad00974971edc79c13252cc7 |
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Add snv and indel bam-readcount files to a vcf
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/vcf_readcount_annotator.cwl Branch/Commit ID: 789267ce0e3fed674ea5212a562315218fcf1bfc |
