Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph merge_duprem_filter.cwl

https://github.com/CompEpigen/ATACseq_workflows.git

Path: CWL/workflow_modules/merge_duprem_filter.cwl

Branch/Commit ID: master
workflow graph kallisto-pe.cwl

https://github.com/yyoshiaki/cwl_user_guide.git

Path: kallisto/kallisto-pe.cwl

Branch/Commit ID: master
workflow graph star_samtools_stringtie_prepDE_DESeq2.cwl

https://github.com/rawgene/cwl.git

Path: workflows/star_samtools_stringtie_prepDE_DESeq2.cwl

Branch/Commit ID: master
workflow graph EMG assembly for paired end Illumina

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: workflows/emg-assembly.cwl

Branch/Commit ID: master
workflow graph word-mapping-test-files-wf.cwl#align-texts-wf.cwl

https://github.com/kbnlresearch/ochre.git

Path: ochre/cwl/word-mapping-test-files-wf.cwl

Branch/Commit ID: master

Packed ID: align-texts-wf.cwl
workflow graph nestedworkflows.cwl

https://github.com/common-workflow-language/user_guide.git

Path: src/_includes/cwl/workflows/nestedworkflows.cwl

Branch/Commit ID: main
workflow graph 1st-workflow.cwl

https://github.com/common-workflow-language/user_guide.git

Path: src/_includes/cwl/workflows/1st-workflow.cwl

Branch/Commit ID: main
workflow graph standard_pipeline.cwl

This is a workflow to go from UMI-tagged fastqs to standard bams. It does not include collapsing, or QC It does include modules 1 and 2

https://github.com/andurill/ACCESS-Pipeline.git

Path: workflows/standard_pipeline.cwl

Branch/Commit ID: master
workflow graph wffail.cwl

https://github.com/common-workflow-language/cwltool.git

Path: tests/wf/wffail.cwl

Branch/Commit ID: main
workflow graph cnv_exomedepth

CNV ExomeDepth calling

https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git

Path: structuralvariants/subworkflows/cnv_exome_depth.cwl

Branch/Commit ID: 3bb03c9b