Explore Workflows

https://github.com/common-workflow-language/common-workflow-language.git

Path: v1.0/v1.0/count-lines1-wf.cwl

Branch/Commit ID: 4fe434e969c93c94b690ba72db295d9d52a6f576

https://github.com/wtsi-hgi/arvados-pipelines.git

Path: cwl/workflows/gatk-4.0.0.0-library-cram-to-gvcfs.cwl

Branch/Commit ID: 53031601de415a071b7034b28984393db183efa7

This workflow will run OxoG, variantbam, and annotate. Run this as `dockstore --script --debug workflow launch --descriptor cwl --local-entry --entry ./oxog_varbam_annotate_wf.cwl --json oxog_varbam_annotat_wf.input.json `

https://github.com/baminou/OxoG-Dockstore-Tools.git

Path: oxog_varbam_annotate_wf.cwl

Branch/Commit ID: ad42ab7a8c7e190d5f8615b52278346262256424

https://github.com/NCI-GDC/gdc-dnaseq-cwl.git

Path: workflows/mirnaseq/runner.cwl

Branch/Commit ID: b0ff19e4e2944340dca1aceaa20ba10624fa59d0

https://github.com/common-workflow-language/common-workflow-language.git

Path: v1.0/v1.0/step-valuefrom-wf.cwl

Branch/Commit ID: 4fe434e969c93c94b690ba72db295d9d52a6f576

This workflow will perform preprocessing steps on VCFs for the OxoG/Variantbam/Annotation workflow.

https://github.com/baminou/OxoG-Dockstore-Tools.git

Path: preprocess_vcf.cwl

Branch/Commit ID: 88c5eef2f5ee5c1e878b0476f6e1f74cecf9ec29

https://github.com/KBNLresearch/ochre.git

Path: ochre/cwl/post-correct-dir.cwl

Branch/Commit ID: 9f33fb8a059b6a75646c82edcd91b6beb645894f

https://github.com/genome/cancer-genomics-workflow.git

Path: pindel/workflow.cwl

Branch/Commit ID: 6791f7701b91dd64f9255d6e1ebde5995ebc581e

This is a subworkflow of the main oxog_varbam_annotat_wf workflow - this is not meant to be run as a stand-alone workflow!

https://github.com/baminou/OxoG-Dockstore-Tools.git

Path: annotator_sub_wf.cwl

Branch/Commit ID: 0fa87c018a21d55cdea6e89be1feec1913144009

https://github.com/duke-gcb/imads-worker.git

Path: predict_service/preference-workflow.cwl

Branch/Commit ID: f6faaa5108cf468b0deec0f391abbd4d98721d84