Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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main-wes_chr21_test.cwl
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https://github.com/garyluu/bcbio_validation_workflows.git
Path: wes-agha-test/wes_chr21_test-workflow-gcp/main-wes_chr21_test.cwl Branch/Commit ID: master |
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wf-variantcall.cwl
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https://github.com/bcbio/bcbio_validation_workflows.git
Path: wes-agha-test/wes_chr21_test-workflow-gcp/wf-variantcall.cwl Branch/Commit ID: master |
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WGS processing workflow for single sample
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https://github.com/arvados/arvados-tutorial.git
Path: WGS-processing/cwl/helper/bwamem-gatk-report-wf.cwl Branch/Commit ID: main |
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GATK-Sub-Workflow-h3abionet-snp.cwl
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https://github.com/h3abionet/h3agatk.git
Path: workflows/GATK/GATK-Sub-Workflow-h3abionet-snp.cwl Branch/Commit ID: 1.0.1 |
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CODEX analysis pipeline using Cytokit
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https://github.com/hubmapconsortium/codex-pipeline.git
Path: pipeline.cwl Branch/Commit ID: a04e55b |
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WGS QC workflow nonhuman
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https://github.com/apaul7/cancer-genomics-workflow.git
Path: definitions/subworkflows/qc_wgs_nonhuman.cwl Branch/Commit ID: low-vaf |
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snapanalysis_setup_and_analyze.cwl
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https://github.com/hubmapconsortium/sc-atac-seq-pipeline.git
Path: steps/snapanalysis_setup_and_analyze.cwl Branch/Commit ID: 102d8cb |
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rRNA_selection.cwl
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https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: tools/rRNA_selection.cwl Branch/Commit ID: 5e82174 |
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simple_two_step.cwl
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https://github.com/NCBI-Hackathons/BLAST-Pipelines-and-FAIR.git
Path: blast-pipelines/simple_two_step.cwl Branch/Commit ID: master |
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Indices builder from GBOL RDF (TTL)
Workflow to build different indices for different tools from a genome and transcriptome. This workflow expects an (annotated) genome in GBOL ttl format. Steps: - SAPP: rdf2gtf (genome fasta) - SAPP: rdf2fasta (transcripts fasta) - STAR index (Optional for Eukaryotic origin) - bowtie2 index - kallisto index |
https://git.wageningenur.nl/unlock/cwl.git
Path: cwl/workflows/workflow_indexbuilder.cwl Branch/Commit ID: master |
