Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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WGS QC workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/qc_wgs.cwl Branch/Commit ID: 8438316338e66823e1c9aca9f675b2bf33f2aa59 |
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hmmsearch_wnode and gpx_qdump combined workflow to apply scatter/gather
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https://github.com/ncbi/pgap.git
Path: task_types/tt_hmmsearch_wnode_plus_qdump.cwl Branch/Commit ID: 546742b523ce12f6246a52c838a51920a08dad4b |
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Seed Protein Alignments I
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https://github.com/ncbi/pgap.git
Path: protein_alignment/wf_seed_1.cwl Branch/Commit ID: 546742b523ce12f6246a52c838a51920a08dad4b |
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trimming-and-qc-no-upload.cwl
Use fastq file as input and do trimming and quality check. Quality checks are done before trimming and after trimming. |
https://github.com/ddbj/SAPPORO_test_workflow.git
Path: workflow/trimming-and-qc/trimming-and-qc-no-upload/trimming-and-qc-no-upload.cwl Branch/Commit ID: d781e9d5ca29a05b334938259357dd1d88198d7f |
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blastp_wnode_naming
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https://github.com/ncbi/pgap.git
Path: task_types/tt_blastp_wnode_naming.cwl Branch/Commit ID: 0bc1c33a2293e054ad00974971edc79c13252cc7 |
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pindel parallel workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/pindel.cwl Branch/Commit ID: cc3e7f1ccfdc7101c22bf88792608504eea7d53a |
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Align reference proteins plane complete workflow
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https://github.com/ncbi/pgap.git
Path: protein_alignment/wf_protein_alignment.cwl Branch/Commit ID: 0bc1c33a2293e054ad00974971edc79c13252cc7 |
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Run tRNAScan
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https://github.com/ncbi/pgap.git
Path: bacterial_trna/wf_trnascan.cwl Branch/Commit ID: 0bc1c33a2293e054ad00974971edc79c13252cc7 |
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CRAM_md5sum.cwl
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https://github.com/DataBiosphere/toolbox.git
Path: CRAM-no-header-md5sum/md5sum/CRAM_md5sum.cwl Branch/Commit ID: c61af852a472aacae54f6df1e209e5ddf3c79db1 |
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spurious_annot pass2
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https://github.com/ncbi/pgap.git
Path: spurious_annot/wf_spurious_annot_pass2.cwl Branch/Commit ID: 0bc1c33a2293e054ad00974971edc79c13252cc7 |
