Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph wrapped_workflow_example_workflow.cwl

https://github.com/Aeolic/example-workflow.git

Path: wrapped_workflow_example_workflow.cwl

Branch/Commit ID: main
workflow graph per_cluster_workflow.cwl

https://github.com/fstrozzi/scalability-reproducibility-chapter.git

Path: CWL/per_cluster_workflow.cwl

Branch/Commit ID: master
workflow graph exome alignment with qc

https://github.com/fgomez02/analysis-workflows.git

Path: definitions/pipelines/exome_alignment.cwl

Branch/Commit ID: No_filters_detect_variants
workflow graph md5sum-workflow.cwl

https://github.com/fhembroff/md5sum-checker.git

Path: md5sum/md5sum-workflow.cwl

Branch/Commit ID: master
workflow graph BLASTP, parse, dump FASTA

https://github.com/ncbi/cwl-demos.git

Path: blast-pipelines/simple_three_step.cwl

Branch/Commit ID: master
workflow graph module-1.cwl

https://github.com/mskcc/Innovation-Pipeline.git

Path: workflows/module-1.cwl

Branch/Commit ID: master
workflow graph qiime2 create phylogenetic tree

Generate a tree for phylogenetic diversity analyses from https://docs.qiime2.org/2018.4/tutorials/moving-pictures/

 https://github.com/Duke-GCB/bespin-cwl.git

Path: packed/qiime2-step2-deblur.cwl

Branch/Commit ID: qiime2-workflow-paired

Packed ID: qiime2-05-phylogeny.cwl
workflow graph sc_atac_seq_process_and_analyze.cwl

https://github.com/hubmapconsortium/sc-atac-seq-pipeline.git

Path: steps/sc_atac_seq_process_and_analyze.cwl

Branch/Commit ID: 7fed36f
workflow graph EMG pipeline v3.0 (single end version)

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: workflows/emg-pipeline-v3.cwl

Branch/Commit ID: 1b0851e
workflow graph biowardrobe_chipseq_se.cwl

The workflow is used to run CHIP-Seq basic analysis with single-end input FASTQ file. In outputs it returns coordinate sorted BAM file alongside with index BAI file, quality statistics of the input FASTQ file, reads coverage in a form of bigWig file, peaks calling data in a form of narrowPeak or broadPeak files.

https://github.com/Barski-lab/ga4gh_challenge.git

Path: biowardrobe_chipseq_se.cwl

Branch/Commit ID: v0.0.3