Explore Workflows
View already parsed workflows here or click here to add your own
Graph | Name | Retrieved From | View |
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scatter GATK HaplotypeCaller over intervals
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![]() Path: definitions/subworkflows/gatk_haplotypecaller_iterator.cwl Branch/Commit ID: e0b3c76e38630fb6234414b5adebfb6a4fb23117 |
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salmon_wf_se.cwl
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![]() Path: workflows/salmon/single_end/salmon_wf_se.cwl Branch/Commit ID: 3affcd5588e273779b8b4084839ed0582ba2ea18 |
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count-lines5-wf.cwl
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![]() Path: cwltool/schemas/v1.0/v1.0/count-lines5-wf.cwl Branch/Commit ID: fec7a10466a26e376b14181a88734983cfb1b8cb |
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03-map-pe.cwl
ChIP-seq 03 mapping - reads: PE |
![]() Path: v1.0/ChIP-seq_pipeline/03-map-pe.cwl Branch/Commit ID: 0c7a51100908034e82ac008ac206d94ff8b011cd |
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strelka workflow
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![]() Path: definitions/subworkflows/strelka_and_post_processing.cwl Branch/Commit ID: 6a55118f915e24d2ad008c93a02d9de5643f5511 |
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Subworkflow that runs cnvkit in single sample mode and returns a vcf file
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![]() Path: definitions/subworkflows/cnvkit_single_sample.cwl Branch/Commit ID: f45b52a24c7b54a75368dcbab24b4eb2c5a9c75a |
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Varscan Workflow
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![]() Path: definitions/subworkflows/varscan_pre_and_post_processing.cwl Branch/Commit ID: 6a55118f915e24d2ad008c93a02d9de5643f5511 |
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Add snv and indel bam-readcount files to a vcf
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![]() Path: definitions/subworkflows/vcf_readcount_annotator.cwl Branch/Commit ID: 6a55118f915e24d2ad008c93a02d9de5643f5511 |
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Exome QC workflow
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![]() Path: definitions/subworkflows/qc_exome.cwl Branch/Commit ID: 6a55118f915e24d2ad008c93a02d9de5643f5511 |
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pindel parallel workflow
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![]() Path: definitions/subworkflows/pindel.cwl Branch/Commit ID: 6a55118f915e24d2ad008c93a02d9de5643f5511 |