Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph scatter GATK HaplotypeCaller over intervals

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/gatk_haplotypecaller_iterator.cwl

Branch/Commit ID: e0b3c76e38630fb6234414b5adebfb6a4fb23117

workflow graph salmon_wf_se.cwl

https://github.com/pitagora-network/pitagora-cwl.git

Path: workflows/salmon/single_end/salmon_wf_se.cwl

Branch/Commit ID: 3affcd5588e273779b8b4084839ed0582ba2ea18

workflow graph count-lines5-wf.cwl

https://github.com/common-workflow-language/cwltool.git

Path: cwltool/schemas/v1.0/v1.0/count-lines5-wf.cwl

Branch/Commit ID: fec7a10466a26e376b14181a88734983cfb1b8cb

workflow graph 03-map-pe.cwl

ChIP-seq 03 mapping - reads: PE

https://github.com/alexbarrera/GGR-cwl.git

Path: v1.0/ChIP-seq_pipeline/03-map-pe.cwl

Branch/Commit ID: 0c7a51100908034e82ac008ac206d94ff8b011cd

workflow graph strelka workflow

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/strelka_and_post_processing.cwl

Branch/Commit ID: 6a55118f915e24d2ad008c93a02d9de5643f5511

workflow graph Subworkflow that runs cnvkit in single sample mode and returns a vcf file

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/cnvkit_single_sample.cwl

Branch/Commit ID: f45b52a24c7b54a75368dcbab24b4eb2c5a9c75a

workflow graph Varscan Workflow

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/varscan_pre_and_post_processing.cwl

Branch/Commit ID: 6a55118f915e24d2ad008c93a02d9de5643f5511

workflow graph Add snv and indel bam-readcount files to a vcf

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/vcf_readcount_annotator.cwl

Branch/Commit ID: 6a55118f915e24d2ad008c93a02d9de5643f5511

workflow graph Exome QC workflow

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/qc_exome.cwl

Branch/Commit ID: 6a55118f915e24d2ad008c93a02d9de5643f5511

workflow graph pindel parallel workflow

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/pindel.cwl

Branch/Commit ID: 6a55118f915e24d2ad008c93a02d9de5643f5511