Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph Preprocess fastq

Remove and trim low quality reads from fastq files. Return fasta files with reads passed and reads removed.

https://github.com/MG-RAST/pipeline.git

Path: CWL/Workflows/preprocess-fastq.workflow.cwl

Branch/Commit ID: 9aba38fd1569287b7256ace7163ac84320909f8a

workflow graph 05-quantification.cwl

ChIP-seq - Quantification - samples: treatment

https://github.com/alexbarrera/GGR-cwl.git

Path: v1.0/ChIP-seq_pipeline/05-quantification.cwl

Branch/Commit ID: 4e568335133405d28f4b73ae11e7f51f2900dfa3

workflow graph adapter for sequence_align_and_tag

Some workflow engines won't stage files in our nested structure, so parse it out here

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/sequence_align_and_tag_adapter.cwl

Branch/Commit ID: 2decd55996b912feb48be5db1b052aa3274ee405

workflow graph process VCF workflow

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/strelka_process_vcf.cwl

Branch/Commit ID: b465f0da2806ddb6df481409541d13288ccb40ec

workflow graph IDR workflow

Irreproducible Discovery Rate (IDR) workflow with Homer annotation

https://github.com/ncbi/cwl-ngs-workflows-cbb.git

Path: workflows/ChIP-Seq/idr.cwl

Branch/Commit ID: 06501cfc314e36749043431e67c2990966b452e0

workflow graph Chipseq alignment with qc and creating homer tag directory

https://github.com/genome/analysis-workflows.git

Path: definitions/pipelines/chipseq.cwl

Branch/Commit ID: b465f0da2806ddb6df481409541d13288ccb40ec

workflow graph Varscan Workflow

https://github.com/litd/analysis-workflows.git

Path: definitions/subworkflows/varscan_germline.cwl

Branch/Commit ID: 18d8efdc4c97c1c9222f603f529b909b36fa42e7

workflow graph HS Metrics workflow

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/hs_metrics.cwl

Branch/Commit ID: 0b6e8fd8ead7644cf5398395b76af5cf4011686f

workflow graph genomics-workspace.cwl

https://github.com/nal-i5k/organism_onboarding.git

Path: flow_genomicsWorkspace/genomics-workspace.cwl

Branch/Commit ID: 45bb8fc5cc5e5fee3f29099469621a53d084757d

workflow graph blastp_wnode_naming

https://github.com/ncbi/pgap.git

Path: task_types/tt_blastp_wnode_naming.cwl

Branch/Commit ID: 9ff3e17888a15f4691ba82380472317214e20a1c