Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	bam to trimmed fastqs and biscuit alignments	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/bam_to_trimmed_fastq_and_biscuit_alignments.cwl Branch/Commit ID: ad65dc1dfff9afa5077f498b85e699716c47f6cb
	conditional_markduplicates.cwl	https://github.com/nci-gdc/gdc-dnaseq-cwl.git Path: workflows/bamfastq_align/conditional_markduplicates.cwl Branch/Commit ID: 8edf6a5e4e7790434ad0742e50d0c97a5d0bb846
	umi per-lane alignment subworkflow	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/umi_alignment.cwl Branch/Commit ID: 8cee1920920ed73384fb3ab74272da9c92a20cf2
	amplicon_metrics.cwl	https://github.com/nci-gdc/gdc-dnaseq-cwl.git Path: workflows/bamfastq_align/amplicon_metrics.cwl Branch/Commit ID: 0d3fdddeae5a398e476d91aa98766965866d8eae
	step-valuefrom3-wf.cwl	https://github.com/common-workflow-language/cwltool.git Path: cwltool/schemas/v1.0/v1.0/step-valuefrom3-wf.cwl Branch/Commit ID: 5c7799a145595323d0a8628be1fe0e24985e793a
	02-trim-se.cwl ChIP-seq 02 trimming - reads: SE	https://github.com/Duke-GCB/GGR-cwl.git Path: v1.0/ChIP-seq_pipeline/02-trim-se.cwl Branch/Commit ID: ffdc6d7b155fe301cd49b6e499097cce966159ef
	metrics.cwl	https://github.com/NCI-GDC/gdc-dnaseq-cwl.git Path: workflows/dnaseq/metrics.cwl Branch/Commit ID: 20a901f44c9fb0e6f4ee3c40ec33fa4b1c8ef005
	Bacterial Annotation, pass 3, structural annotation, functional annotation: ab initio GeneMark, by WP, by HMM (second pass)	https://github.com/ncbi/pgap.git Path: bacterial_annot/wf_bacterial_annot_pass3.cwl Branch/Commit ID: 1bf7dc7b03ea3c64e54375cc5c3767849a801000
	amplicon_metrics.cwl	https://github.com/nci-gdc/gdc-dnaseq-cwl.git Path: workflows/bamfastq_align/amplicon_metrics.cwl Branch/Commit ID: 2f7c0e92e7b88b57b86602f11c595661c374008a
	gp_makeblastdb	https://github.com/ncbi/pgap.git Path: progs/gp_makeblastdb.cwl Branch/Commit ID: 1bf7dc7b03ea3c64e54375cc5c3767849a801000