Explore Workflows
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| Graph | Name | Retrieved From | View |
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Bacterial Annotation, pass 4, blastp-based functional annotation (second pass)
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https://github.com/ncbi/pgap.git
Path: bacterial_annot/wf_bacterial_annot_pass4.cwl Branch/Commit ID: be5ae41801b19ebc69a2889d8fdb39e8e2359611 |
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Bacterial Annotation, pass 3, structural annotation, functional annotation: ab initio GeneMark, by WP, by HMM (second pass)
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https://github.com/ncbi/pgap.git
Path: bacterial_annot/wf_bacterial_annot_pass3.cwl Branch/Commit ID: be5ae41801b19ebc69a2889d8fdb39e8e2359611 |
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spurious_annot
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https://github.com/ncbi/pgap.git
Path: spurious_annot/wf_spurious_annot_pass1.cwl Branch/Commit ID: be5ae41801b19ebc69a2889d8fdb39e8e2359611 |
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gp_makeblastdb
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https://github.com/ncbi/pgap.git
Path: progs/gp_makeblastdb.cwl Branch/Commit ID: be5ae41801b19ebc69a2889d8fdb39e8e2359611 |
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Execute CRISPR
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https://github.com/ncbi/pgap.git
Path: bacterial_mobile_elem/wf_bacterial_mobile_elem.cwl Branch/Commit ID: be5ae41801b19ebc69a2889d8fdb39e8e2359611 |
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Run genomic CMsearch (Rfam rRNA)
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https://github.com/ncbi/pgap.git
Path: bacterial_ncrna/wf_gcmsearch.cwl Branch/Commit ID: be5ae41801b19ebc69a2889d8fdb39e8e2359611 |
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02-trim-se.cwl
ChIP-seq 02 trimming - reads: SE |
https://github.com/alexbarrera/GGR-cwl.git
Path: v1.0/ChIP-seq_pipeline/02-trim-se.cwl Branch/Commit ID: 3a4314c66c1eb090e656af5a0d388cec87d65318 |
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module-1-scatter-chunk
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https://github.com/mskcc/roslin-variant.git
Path: setup/cwl/module-1.scatter.chunk.cwl Branch/Commit ID: 45f7695e28fa2185944fd220834eeac2e27d53c7 |
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05-quantification.cwl
ChIP-seq - Quantification - samples: treatment |
https://github.com/alexbarrera/GGR-cwl.git
Path: v1.0/ChIP-seq_pipeline/05-quantification.cwl Branch/Commit ID: 3a4314c66c1eb090e656af5a0d388cec87d65318 |
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Bacterial Annotation, pass 1, genemark training, by HMMs (first pass)
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https://github.com/ncbi/pgap.git
Path: bacterial_annot/wf_bacterial_annot_pass1.cwl Branch/Commit ID: be5ae41801b19ebc69a2889d8fdb39e8e2359611 |
