Explore Workflows
View already parsed workflows here or click here to add your own
Graph | Name | Retrieved From | View |
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fasta2taxa-plot
Input is a fasta file with n>1 samples, with sample id as sequence identifier prefix, and a sample id file. The workflow calls open otus and assigns taxa using greengenes. The output are taxa plots. |
https://github.com/MG-RAST/qiime-pipeline.git
Path: CWL/Workflows/qiime/cluster2plot.cwl Branch/Commit ID: master |
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scRNA-seq pipeline using Salmon and Alevin
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https://github.com/hubmapconsortium/salmon-rnaseq.git
Path: pipeline.cwl Branch/Commit ID: d71be68 |
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giab_haplotypecaller.cwl
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https://github.com/uc-cdis/genomel_pipelines.git
Path: genomel/cwl/workflows/variant_calling/giab_haplotypecaller.cwl Branch/Commit ID: master |
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03-map-se-blacklist-removal.cwl
ATAC-seq 03 mapping - reads: SE |
https://github.com/Duke-GCB/GGR-cwl.git
Path: v1.0/ATAC-seq_pipeline/03-map-se-blacklist-removal.cwl Branch/Commit ID: v1.0.0 |
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RNASelector as a CWL workflow
https://doi.org/10.1007/s12275-011-1213-z |
https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: workflows/rna-selector.cwl Branch/Commit ID: 1b0851e |
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Detect Variants workflow
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https://github.com/fgomez02/analysis-workflows.git
Path: definitions/pipelines/detect_variants.cwl Branch/Commit ID: No_filters_detect_variants |
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nmrpipe_workflow.cwl
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https://github.com/andreagia/CWL_dem1_NMR_Peak_Picking.git
Path: nmrpipe_workflow.cwl Branch/Commit ID: master |
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wf_trim_partial_and_map_se_scatter.cwl
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https://github.com/YeoLab/eclip.git
Path: cwl/wf_trim_partial_and_map_se_scatter.cwl Branch/Commit ID: master |
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wf_get_peaks_scatter_se_nostats.cwl
The \"main\" workflow. Takes fastq files generated using the seCLIP protocol (https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5991800/) and outputs candidate RBP binding regions (peaks). runs: wf_get_peaks_se.cwl through scatter across multiple samples. |
https://github.com/YeoLab/eclip.git
Path: cwl/wf_get_peaks_scatter_se_nostats.cwl Branch/Commit ID: master |
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gathered exome alignment and somatic variant detection for cle purpose
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https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/somatic_exome_cle_gathered.cwl Branch/Commit ID: master |