Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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bulk scRNA-seq pipeline using Salmon
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https://github.com/hubmapconsortium/salmon-rnaseq.git
Path: bulk-pipeline.cwl Branch/Commit ID: 8af5a1c |
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wf-svcall.cwl
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https://github.com/bcbio/bcbio_validation_workflows.git
Path: wes-agha-test/wes_chr21_test-workflow-arvados/wf-svcall.cwl Branch/Commit ID: master |
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Produce a list of residue-mapped structural domain instances from CATH ids
Retrieve and process the PDB structures corresponding to the CATH superfamily ids resulting in a list of residue-mapped structural domain instances along with lost structural instances (requires Data/cath_domain_description_file.txt downloaded from CATH and uses SIFTS resource for PDB to UniProt residue Mapping) |
https://github.com/HrishiDhondge/CroMaSt.git
Path: Tools/resmapping_cath_instances_subwf.cwl Branch/Commit ID: main |
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02-trim-pe.cwl
ATAC-seq 02 trimming - reads: PE |
https://github.com/Duke-GCB/GGR-cwl.git
Path: v1.0/ATAC-seq_pipeline/02-trim-pe.cwl Branch/Commit ID: v1.0.0 |
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GATK-Sub-Workflow-h3abionet-indel-no-vqsr.cwl
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https://github.com/common-workflow-language/workflows.git
Path: workflows/GATK/GATK-Sub-Workflow-h3abionet-indel-no-vqsr.cwl Branch/Commit ID: h3abionet-gatk-workflow |
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exome alignment and somatic variant detection for cle purpose
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https://github.com/apaul7/cancer-genomics-workflow.git
Path: definitions/pipelines/somatic_exome_cle.cwl Branch/Commit ID: low-vaf |
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chksum_for_a_corrupted_fastq_file.cwl
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https://github.com/cancerit/workflow-seq-import.git
Path: cwls/chksum_for_a_corrupted_fastq_file.cwl Branch/Commit ID: master |
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Functional analyis of sequences that match the 16S SSU
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https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: workflows/16S_taxonomic_analysis.cwl Branch/Commit ID: 5833078 |
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bams2gvcf.woBQSR_female.cwl
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https://github.com/ddbj/human-reseq.git
Path: Workflows/bams2gvcf.woBQSR_female.cwl Branch/Commit ID: master |
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02-trim-se.cwl
RNA-seq 02 trimming - reads: SE |
https://github.com/Duke-GCB/GGR-cwl.git
Path: v1.0/RNA-seq_pipeline/02-trim-se.cwl Branch/Commit ID: master |
