Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	Build Bowtie indices Workflow runs [Bowtie](http://bowtie-bio.sourceforge.net/tutorial.shtml) v1.2.0 (12/30/2016) to build indices for reference genome provided in a single FASTA file as fasta_file input. Generated indices are saved in a folder with the name that corresponds to the input genome	https://github.com/datirium/workflows.git Path: workflows/bowtie-index.cwl Branch/Commit ID: a68821bf3a9ceadc3b2ffbb535d601d9a645b377
	hmmsearch_wnode and gpx_qdump combined workflow to apply scatter/gather	https://github.com/ncbi/pgap.git Path: task_types/tt_hmmsearch_wnode_plus_qdump.cwl Branch/Commit ID: b560e3abadfb150a0013376d7a189df066ab56f9
	genomics-workspace-protein.cwl	https://github.com/NAL-i5K/Organism_Onboarding.git Path: flow_genomicsWorkspace/genomics-workspace-protein.cwl Branch/Commit ID: 68c9a1724f9fdb8e5e38a34c54414699a1e18407
	Hello World Outputs a message using echo	https://github.com/common-workflow-language/cwltool.git Path: tests/wf/hello-workflow.cwl Branch/Commit ID: c7c379948c02ba8f048d157f06eb903b1bda9894
	running cellranger mkfastq and count	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/cellranger_mkfastq_and_count.cwl Branch/Commit ID: 42c66dd24ce5026d3f717214ddb18b7b4fae93cf
	cwlsite.cwl	https://github.com/common-workflow-language/cwltool.git Path: cwltool/schemas/site/cwlsite.cwl Branch/Commit ID: c7c379948c02ba8f048d157f06eb903b1bda9894
	count-lines1-wf.cwl	https://github.com/common-workflow-language/cwltool.git Path: tests/wf/count-lines1-wf.cwl Branch/Commit ID: d32d569a3cca9c94664a6d0f4c7e99e16abaf7b8
	workflow.cwl	https://github.com/nal-i5k/organism_onboarding.git Path: flow_download/workflow.cwl Branch/Commit ID: 68c9a1724f9fdb8e5e38a34c54414699a1e18407
	running cellranger mkfastq and count	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/cellranger_mkfastq_and_count.cwl Branch/Commit ID: 3042812447d9e8889c6118986490e9c9b9b13223
	cluster_blastp_wnode and gpx_qdump combined	https://github.com/ncbi/pgap.git Path: task_types/tt_cluster_and_qdump.cwl Branch/Commit ID: 669166450aba26f3560c15960eeebdd0313a7f84