Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
|---|---|---|---|
|
|
split_bam_workflow.cwl
|
https://github.com/nci-gdc/htseq-cwl.git
Path: workflows/subworkflows/split_bam_workflow.cwl Branch/Commit ID: master |
|
|
|
minibam_sub_wf.cwl
This is a subworkflow of the main oxog_varbam_annotat_wf workflow - this is not meant to be run as a stand-alone workflow! |
https://github.com/ICGC-TCGA-PanCancer/OxoG-Dockstore-Tools.git
Path: minibam_sub_wf.cwl Branch/Commit ID: develop |
|
|
|
02-trim-se.cwl
RNA-seq 02 trimming - reads: SE |
https://github.com/alexbarrera/GGR-cwl.git
Path: v1.0/RNA-seq_pipeline/02-trim-se.cwl Branch/Commit ID: master |
|
|
|
Non-Coding Bacterial Genes
|
https://github.com/slottad/pgap.git
Path: bacterial_noncoding/wf_bacterial_noncoding.cwl Branch/Commit ID: master |
|
|
|
genomel_cohort_gatk4.cwl
|
https://github.com/uc-cdis/genomel_pipelines.git
Path: genomel/genomel_cohort_gatk4.cwl Branch/Commit ID: master |
|
|
|
post-correct-test-files.cwl
|
https://github.com/KBNLresearch/ochre.git
Path: ochre/cwl/post-correct-test-files.cwl Branch/Commit ID: master |
|
|
|
indexing_bed
|
https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git
Path: structuralvariants/cwl/subworkflows/indexing_bed.cwl Branch/Commit ID: 1.0.7 |
|
|
|
rhapsody_pipeline_2.0.cwl#VDJ_Analyze_Reads_IG.cwl
|
https://github.com/Chi-CRL/cwl_check_workflow.git
Path: rhapsody_pipeline_2.0.cwl Branch/Commit ID: main Packed ID: VDJ_Analyze_Reads_IG.cwl |
|
|
|
find_hotspots_in_normals.cwl
Workflow to find hotspot VAFs from duplex (for Tumor sample) and unfiltered (for Normal sample) pileups. These inputs are all required to be sorted in the same order: sample_ids patient_ids sample_classes unfiltered_pileups duplex_pileups |
https://github.com/andurill/ACCESS-Pipeline.git
Path: workflows/subworkflows/find_hotspots_in_normals.cwl Branch/Commit ID: master |
|
|
|
chksum_xam_to_interleaved_fq.cwl
|
https://github.com/cancerit/workflow-seq-import.git
Path: cwls/chksum_xam_to_interleaved_fq.cwl Branch/Commit ID: master |
