Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph Raw sequence data to BQSR

https://github.com/apaul7/cancer-genomics-workflow.git

Path: definitions/subworkflows/sequence_to_bqsr.cwl

Branch/Commit ID: low-vaf
workflow graph pindel parallel workflow

https://github.com/genome/cancer-genomics-workflow.git

Path: pindel/workflow.cwl

Branch/Commit ID: toil_compatibility
workflow graph sam_to_fastq_workflow.cwl

sam to fastq workflow

 https://github.com/CRI-iAtlas/iatlas-workflows.git

Path: Sam_to_Fastq/workflow/sam_to_fastq_workflow.cwl

Branch/Commit ID: develop
workflow graph main.cwl

https://github.com/kyusque/ajf_man2hybrid.git

Path: main.cwl

Branch/Commit ID: main
workflow graph Find reads with predicted coding sequences above 60 AA in length

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: workflows/orf_prediction.cwl

Branch/Commit ID: 43d2fb8
workflow graph revcomp.cwl

https://github.com/puentesdiaz/workflows.git

Path: workflows/sanbi_cwltutorial/revcomp/revcomp.cwl

Branch/Commit ID: master
workflow graph Apply filters to VCF file

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/filter_vcf.cwl

Branch/Commit ID: master
workflow graph qiime2 DADA2 detect/correct sequence data

Option 1: DADA2 from https://docs.qiime2.org/2018.4/tutorials/moving-pictures/

 https://github.com/Duke-GCB/bespin-cwl.git

Path: packed/qiime2-step2-dada2.cwl

Branch/Commit ID: qiime2-workflow

Packed ID: qiime2-03-dada2.cwl
workflow graph ValidatePedestalEvents

Compare simulated and measured pedestal events (exposed to night-sky background light and with closed camera lid).

 https://github.com/gammasim/workflows.git

Path: workflows/ValidatePedestalEvents.cwl

Branch/Commit ID: main
workflow graph count-lines16-wf.cwl

https://github.com/common-workflow-language/cwl-v1.1.git

Path: tests/count-lines16-wf.cwl

Branch/Commit ID: master