Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph exomeseq-gatk4/v2.2.0

Whole Exome Sequence analysis using GATK4 - v2.2.0

 https://github.com/bespin-workflows/exomeseq-gatk4.git

Path: exomeseq-gatk4.cwl

Branch/Commit ID: develop
workflow graph scatter2.cwl

https://github.com/common-workflow-language/cwltool.git

Path: tests/wf/scatter2.cwl

Branch/Commit ID: main
workflow graph infuse_pipeline.cwl

https://github.com/cancerit/cgpRna.git

Path: cwls/infuse_pipeline.cwl

Branch/Commit ID: dev
workflow graph Single-cell Multiome ATAC and RNA-Seq Alignment

Single-cell Multiome ATAC and RNA-Seq Alignment Runs Cell Ranger ARC Count to quantifies chromatin accessibility and gene expression from a single-cell Multiome ATAC and RNA-Seq library

 https://github.com/Barski-lab/sc-seq-analysis.git

Path: workflows/sc-multiome-align-wf.cwl

Branch/Commit ID: main
workflow graph 02-trim-pe.cwl

ChIP-seq 02 trimming - reads: PE

 https://github.com/Duke-GCB/GGR-cwl.git

Path: v1.0/ChIP-seq_pipeline/02-trim-pe.cwl

Branch/Commit ID: master
workflow graph pipeline-pe-umis.cwl

STARR-seq pipeline - reads: PE

 https://github.com/alexbarrera/GGR-cwl.git

Path: v1.0/STARR-seq_pipeline/pipeline-pe-umis.cwl

Branch/Commit ID: master
workflow graph Salmon quantification, FASTQ -> H5AD count matrix

https://github.com/hubmapconsortium/salmon-rnaseq.git

Path: steps/salmon-quantification.cwl

Branch/Commit ID: 16dd8ca
workflow graph cmsearch-multimodel.cwl

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: workflows/cmsearch-multimodel.cwl

Branch/Commit ID: 71d9c83
workflow graph dynresreq-workflow-inputdefault.cwl

https://github.com/common-workflow-language/cwl-v1.1.git

Path: tests/dynresreq-workflow-inputdefault.cwl

Branch/Commit ID: master
workflow graph Pipeline for evaluating differential expression of genes across datasets

https://github.com/hubmapconsortium/rna-data-products.git

Path: pipeline.cwl

Branch/Commit ID: main