Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
|---|---|---|---|
|
|
vqsr-flow.cwl
run vqsr flow, including vqsr rcal, vqsr apply and plot |
https://github.com/Sentieon/Sentieon-cwl.git
Path: stage/vqsr-flow.cwl Branch/Commit ID: d20382adfe7285cb517a25d95d2bcb7586546e23 |
|
|
|
spurious_annot pass2
|
https://github.com/ncbi/pgap.git
Path: spurious_annot/wf_spurious_annot_pass2.cwl Branch/Commit ID: b0ee40d34d233f1611c2e2c66b6d22a3b7deec05 |
|
|
|
processbamfiles.cwl
|
https://github.com/PMCC-BioinformaticsCore/janis-examplepipelines.git
Path: example_cwl/tools/processbamfiles.cwl Branch/Commit ID: ed99d63d6f4741ac6e1fa7752c62693705d99633 |
|
|
|
bam to trimmed fastqs and biscuit alignments
|
https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/bam_to_trimmed_fastq_and_biscuit_alignments.cwl Branch/Commit ID: 844c10a4466ab39c02e5bfa7a210c195b8efa77a |
|
|
|
Bacterial Annotation, pass 4, blastp-based functional annotation (second pass)
|
https://github.com/ncbi/pgap.git
Path: bacterial_annot/wf_bacterial_annot_pass4.cwl Branch/Commit ID: c28cfb9882dedd3c522160f933cff1050ae24100 |
|
|
|
pass-unconnected.cwl
|
https://github.com/common-workflow-language/common-workflow-language.git
Path: v1.0/v1.0/pass-unconnected.cwl Branch/Commit ID: 40fcfc01812046f012acf5153cc955ee848e69e3 |
|
|
|
final-workflow.cwl
|
https://github.com/NAL-i5K/Organism_Onboarding.git
Path: final-workflow.cwl Branch/Commit ID: f452184daca189341f65e09a0d5ab878dd312dfd |
|
|
|
spurious_annot pass2
|
https://github.com/ncbi/pgap.git
Path: spurious_annot/wf_spurious_annot_pass2.cwl Branch/Commit ID: c28cfb9882dedd3c522160f933cff1050ae24100 |
|
|
|
Downsample and HaplotypeCaller
|
https://github.com/tmooney/cancer-genomics-workflow.git
Path: definitions/pipelines/downsample_and_recall.cwl Branch/Commit ID: 233f026ffce240071edda526391be0c03186fce8 |
|
|
|
Non-Coding Bacterial Genes
|
https://github.com/ncbi/pgap.git
Path: bacterial_noncoding/wf_bacterial_noncoding.cwl Branch/Commit ID: c28cfb9882dedd3c522160f933cff1050ae24100 |
