Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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Subworkflow that runs cnvkit in single sample mode and returns a vcf file
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https://github.com/fgomez02/analysis-workflows.git
Path: definitions/subworkflows/cnvkit_single_sample.cwl Branch/Commit ID: No_filters_detect_variants |
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RNASelector as a CWL workflow
https://doi.org/10.1007/s12275-011-1213-z |
https://github.com/proteinswebteam/ebi-metagenomics-cwl.git
Path: workflows/rna-selector.cwl Branch/Commit ID: 5dc7c5c |
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biowardrobe_chipseq_se.cwl
Current workflow is used to run CHIP-Seq basic analysis with single-end input FASTQ file. In outputs it returns coordinate sorted BAM file alongside with index BAI file, quality statistics of the input FASTQ file, reads coverage in a form of BigWig file, peaks calling data in a form of narrowPeak or broadPeak files. |
https://github.com/Barski-lab/ga4gh_challenge.git
Path: biowardrobe_chipseq_se.cwl Branch/Commit ID: v0.0.2 |
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bwa_mem
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https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git
Path: structuralvariants/cwl/subworkflows/bwa_mem.cwl Branch/Commit ID: 1.0.7 |
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kfdrc-jointgenotyping-refinement-workflow.cwl
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https://github.com/kids-first/kf-jointgenotyping-workflow.git
Path: workflow/kfdrc-jointgenotyping-refinement-workflow.cwl Branch/Commit ID: master |
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EMG assembly for paired end Illumina
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https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: workflows/emg-assembly.cwl Branch/Commit ID: 56dafa4 |
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Bacterial Annotation (two-pass)
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https://github.com/slottad/pgap.git
Path: bacterial_annot/wf_bacterial_annot.cwl Branch/Commit ID: master |
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EMG assembly for paired end Illumina
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https://github.com/proteinswebteam/ebi-metagenomics-cwl.git
Path: workflows/emg-pipeline-v4-assembly-metaSPAdes.cwl Branch/Commit ID: master |
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5S-from-tablehits.cwl
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https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: tools/5S-from-tablehits.cwl Branch/Commit ID: d4e5e53 |
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wf_get_peaks_scatter_pe.cwl
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https://github.com/YeoLab/eclip.git
Path: cwl/wf_get_peaks_scatter_pe.cwl Branch/Commit ID: master |
