Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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varscan somatic workflow
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https://github.com/ChrisMaherLab/PACT.git
Path: subworkflows/varscan.cwl Branch/Commit ID: master |
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Varscan Workflow
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https://github.com/tmooney/cancer-genomics-workflow.git
Path: definitions/subworkflows/varscan_pre_and_post_processing.cwl Branch/Commit ID: downsample_and_recall |
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SPRM pipeline
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https://github.com/hubmapconsortium/sprm.git
Path: pipeline.cwl Branch/Commit ID: 0cb2efa |
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5S-from-tablehits.cwl
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https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: tools/5S-from-tablehits.cwl Branch/Commit ID: 5dc7c5c |
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EMG assembly for paired end Illumina
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https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: workflows/emg-assembly.cwl Branch/Commit ID: 3168316 |
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Functional analyis of sequences that match the 16S SSU
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https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: workflows/16S_taxonomic_analysis.cwl Branch/Commit ID: 5833078 |
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format-maf
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https://github.com/mskcc/roslin-variant.git
Path: setup/cwl/portal-formatting.cli/1.0.0/format-maf.cwl Branch/Commit ID: 2.4.x |
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revcomp.cwl
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https://github.com/pvanheus/cwltutorial.git
Path: revcomp/revcomp.cwl Branch/Commit ID: master |
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biowardrobe_chipseq_se.cwl
The workflow is used to run CHIP-Seq basic analysis with single-end input FASTQ file. In outputs it returns coordinate sorted BAM file alongside with index BAI file, quality statistics of the input FASTQ file, reads coverage in a form of bigWig file, peaks calling data in a form of narrowPeak or broadPeak files. |
https://github.com/Barski-lab/ga4gh_challenge.git
Path: biowardrobe_chipseq_se.cwl Branch/Commit ID: v0.0.5 |
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AcceptParameterWorkflowMissing
this is a placeholder for a missing acceptance workflow. |
https://github.com/gammasim/workflows.git
Path: workflows/AcceptParameterWorkflowMissing.cwl Branch/Commit ID: main |
