Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph umi per-lane alignment subworkflow

https://github.com/fgomez02/analysis-workflows.git

Path: definitions/subworkflows/umi_alignment.cwl

Branch/Commit ID: No_filters_detect_variants
workflow graph preference-workflow.cwl

https://github.com/johnbradley/iMADS-worker.git

Path: predict_service/preference-workflow.cwl

Branch/Commit ID: master
workflow graph cond-wf-003.1_nojs.cwl

https://github.com/common-workflow-language/cwl-v1.2.git

Path: tests/conditionals/cond-wf-003.1_nojs.cwl

Branch/Commit ID: main
workflow graph bacteria-genome.cwl

DAT2-cwl bacteria genome data analysis workflow. see https://github.com/pitagora-network/DAT2-cwl/blob/main/workflow/bacteria-genome/README.md

 https://github.com/pitagora-network/DAT2-cwl.git

Path: workflow/bacteria-genome/bacteria-genome.cwl

Branch/Commit ID: main
workflow graph 01-qc-pe.cwl

STARR-seq 01 QC - reads: PE

 https://github.com/Duke-GCB/GGR-cwl.git

Path: v1.0/STARR-seq_pipeline/01-qc-pe.cwl

Branch/Commit ID: master
workflow graph WGSSomaticMultiCallers_1_4_0.cwl

https://github.com/PMCC-BioinformaticsCore/janis-pipelines.git

Path: janis_pipelines/wgs_somatic/cwl/WGSSomaticMultiCallers_1_4_0.cwl

Branch/Commit ID: master
workflow graph TAP 0.9

todo

 https://github.com/MG-RAST/amplicon.git

Path: CWL/Workflows/relabel-and-merge.cwl

Branch/Commit ID: master
workflow graph pipeline-pe-umis.cwl

STARR-seq pipeline - reads: PE

 https://github.com/Duke-GCB/GGR-cwl.git

Path: v1.0/STARR-seq_pipeline/pipeline-pe-umis.cwl

Branch/Commit ID: master
workflow graph Single-cell RNA-Seq Analyze

Single-cell RNA-Seq Analyze Runs filtering, normalization, scaling, integration (optionally) and clustering for a single or aggregated single-cell RNA-Seq datasets.

 https://github.com/Barski-lab/sc-seq-analysis.git

Path: workflows/sc-rna-analyze-wf.cwl

Branch/Commit ID: main
workflow graph qiime2 explore sample taxonomic composition

Taxonomic analysis from https://docs.qiime2.org/2018.4/tutorials/moving-pictures/

 https://github.com/Duke-GCB/bespin-cwl.git

Path: packed/qiime2-step2-dada2.cwl

Branch/Commit ID: qiime2-workflow-paired

Packed ID: qiime2-08-taxonomic-analysis.cwl