Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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mutect panel-of-normals workflow
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https://github.com/tmooney/cancer-genomics-workflow.git
Path: definitions/pipelines/panel_of_normals.cwl Branch/Commit ID: downsample_and_recall |
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Replace legacy AML Trio Assay
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https://github.com/tmooney/cancer-genomics-workflow.git
Path: definitions/pipelines/aml_trio_cle.cwl Branch/Commit ID: downsample_and_recall |
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genome-kallisto-index.cwl
Generates a FASTA file with the DNA sequences for all transcripts in a GFF file and builds kallisto index |
https://github.com/Barski-lab/workflows.git
Path: tools/genome-kallisto-index.cwl Branch/Commit ID: master |
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Hello World
Puts a message into a file using echo |
https://github.com/markrobbo/workflows.git
Path: workflows/hello/hello.cwl Branch/Commit ID: master Packed ID: main |
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tRNA_selection.cwl
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https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: tools/tRNA_selection.cwl Branch/Commit ID: 135976d |
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trimmed_fastq
Quality Control (raw data), Raw Data trimming and Quality Control (pre-processed) |
https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git
Path: structuralvariants/cwl/subworkflows/trimmed_fastq.cwl Branch/Commit ID: 1.0.7 |
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EMG QC workflow, (paired end version). Benchmarking with MG-RAST expt.
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https://github.com/EBI-Metagenomics/ebi-metagenomics-cwl.git
Path: workflows/emg-qc-paired.cwl Branch/Commit ID: 3f85843 |
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pack.cwl
create textures and pack them to be a stellaris mod |
https://github.com/undu/stellaris-emblem-lab.git
Path: pack/pack.cwl Branch/Commit ID: master |
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Bacterial Annotation, pass 2, blastp-based functional annotation (first pass)
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https://github.com/ncbi/pgap.git
Path: bacterial_annot/wf_bacterial_annot_pass2.cwl Branch/Commit ID: master |
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germline-gpu-v4.1.1.cwl
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https://github.com/NCGM-genome/WGSpipeline.git
Path: Workflows/germline-gpu-v4.1.1.cwl Branch/Commit ID: main |
