Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	Varscan Workflow	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/varscan_germline.cwl Branch/Commit ID: 3bebaf9b70331de9f4845e2223c55082f5a812fb
	Bacterial Annotation, pass 3, structural annotation, functional annotation: ab initio GeneMark, by WP, by HMM (second pass)	https://github.com/ncbi/pgap.git Path: bacterial_annot/wf_bacterial_annot_pass3.cwl Branch/Commit ID: 4def84df33963fc9ac9d5c5f804b911d01a0d9ad
	bam_readcount workflow	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/bam_readcount.cwl Branch/Commit ID: 42c66dd24ce5026d3f717214ddb18b7b4fae93cf
	tt_kmer_top_n.cwl	https://github.com/ncbi/pgap.git Path: task_types/tt_kmer_top_n.cwl Branch/Commit ID: 0514ffe248dd11068a3f2268bc67b6ce5ab051d2
	workflow.cwl	https://github.com/jarnolaitinen/RD_pipeline.git Path: workflow.cwl Branch/Commit ID: 652306689de74d977016cfef7eb2940ec689c514
	tt_kmer_top_n.cwl	https://github.com/ncbi/pgap.git Path: task_types/tt_kmer_top_n.cwl Branch/Commit ID: f225cd99b0e0a5043dd102f8b33a6139fefe9ea4
	adapter for sequence_align_and_tag Some workflow engines won't stage files in our nested structure, so parse it out here	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/sequence_align_and_tag_adapter.cwl Branch/Commit ID: c23dc7f113ca0b0a3127a5d6c696e98d4799460c
	BLAST against rRNA db	https://github.com/ncbi/pgap.git Path: bacterial_noncoding/wf_blastn.cwl Branch/Commit ID: af78bfbc7625a817a2875e87c8ee267cf46b8c57
	LSU-from-tablehits.cwl	https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git Path: tools/LSU-from-tablehits.cwl Branch/Commit ID: cac44f2cf14110fde9951161c663c4525772f616
	mutect parallel workflow	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/mutect.cwl Branch/Commit ID: 038cb3617a1966a1057386adcde97ce55d9e1139