Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph exome alignment and somatic variant detection

https://github.com/genome/cancer-genomics-workflow.git

Path: somatic_exome_workflow.cwl

Branch/Commit ID: eb565eac07209017b12ed79057b40cbf44fb6a0d
workflow graph count-lines7-wf.cwl

https://github.com/common-workflow-language/cwltool.git

Path: cwltool/schemas/v1.0/v1.0/count-lines7-wf.cwl

Branch/Commit ID: ae401a813472ca453a99ad067a5e6fc3bd71112b
workflow graph fastq_clean_pe.cwl

https://github.com/NCI-GDC/gdc-dnaseq-cwl.git

Path: workflows/bamfastq_align/fastq_clean_pe.cwl

Branch/Commit ID: 0c1a40ea1efb1656644ccec0b7abe659539340e7
workflow graph extract_readgroups_bam.cwl

https://github.com/nci-gdc/gdc-dnaseq-cwl.git

Path: workflows/bamfastq_align/extract_readgroups_bam.cwl

Branch/Commit ID: 0c1a40ea1efb1656644ccec0b7abe659539340e7
workflow graph anonymize.cwl

Replace named entities in a directory of text files. Can be used as part of an data anonymization workflow.

https://github.com/WhatWorksWhenForWhom/nlppln.git

Path: nlppln/cwl/anonymize.cwl

Branch/Commit ID: e9ea0c58019e4541ffcc9defb8a1cfdb619e519d
workflow graph scatter GATK HaplotypeCaller over intervals

https://github.com/genome/cancer-genomics-workflow.git

Path: detect_variants/gatk_haplotypecaller_iterator.cwl

Branch/Commit ID: d1ee6a2a323cee7e4af00c7e0b926c2192038e1d
workflow graph count-lines7-wf.cwl

https://github.com/common-workflow-language/cwltool.git

Path: cwltool/schemas/v1.0/v1.0/count-lines7-wf.cwl

Branch/Commit ID: 7c7615c44b80f8e76e659433f8c7875603ae0b25
workflow graph wf_makeblastdb.cwl

https://github.com/ncbi/pipelines.git

Path: amr_finder/wf_makeblastdb.cwl

Branch/Commit ID: 7a5fae087e42ec7d2bfdf3f88ba2ea1e8fdc9ddf
workflow graph count-lines10-wf.cwl

https://github.com/common-workflow-language/cwltool.git

Path: cwltool/schemas/v1.0/v1.0/count-lines10-wf.cwl

Branch/Commit ID: 49cd284a8fc7884de763573075d3e1d6a4c1ffdd
workflow graph compile1.cwl#main

https://github.com/common-workflow-language/workflows.git

Path: workflows/compile/compile1.cwl

Branch/Commit ID: 695af59a9da0f6aa700f6c2f41ebc3622659aac1

Packed ID: main