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Graph	Name	Retrieved From	View
	Bacterial Annotation, pass 4, blastp-based functional annotation (second pass)	https://github.com/ncbi/pgap.git Path: bacterial_annot/wf_bacterial_annot_pass4.cwl Branch/Commit ID: ea8c2aea64cab2241e02f4cb60ca9ca7593dfa58
	Create Genomic Collection for Bacterial Pipeline, ASN.1 input	https://github.com/ncbi/pgap.git Path: genomic_source/wf_genomic_source_asn.cwl Branch/Commit ID: ea8c2aea64cab2241e02f4cb60ca9ca7593dfa58
	Bacterial Annotation, pass 3, structural annotation, functional annotation: ab initio GeneMark, by WP, by HMM (second pass)	https://github.com/ncbi/pgap.git Path: bacterial_annot/wf_bacterial_annot_pass3.cwl Branch/Commit ID: ea8c2aea64cab2241e02f4cb60ca9ca7593dfa58
	spurious_annot	https://github.com/ncbi/pgap.git Path: spurious_annot/wf_spurious_annot_pass1.cwl Branch/Commit ID: ea8c2aea64cab2241e02f4cb60ca9ca7593dfa58
	gp_makeblastdb	https://github.com/ncbi/pgap.git Path: progs/gp_makeblastdb.cwl Branch/Commit ID: ea8c2aea64cab2241e02f4cb60ca9ca7593dfa58
	Execute CRISPR	https://github.com/ncbi/pgap.git Path: bacterial_mobile_elem/wf_bacterial_mobile_elem.cwl Branch/Commit ID: ea8c2aea64cab2241e02f4cb60ca9ca7593dfa58
	Run genomic CMsearch (Rfam rRNA)	https://github.com/ncbi/pgap.git Path: bacterial_ncrna/wf_gcmsearch.cwl Branch/Commit ID: ea8c2aea64cab2241e02f4cb60ca9ca7593dfa58
	Non-Coding Bacterial Genes	https://github.com/ncbi/pgap.git Path: bacterial_noncoding/wf_bacterial_noncoding.cwl Branch/Commit ID: ea8c2aea64cab2241e02f4cb60ca9ca7593dfa58
	env-wf3.cwl	https://github.com/common-workflow-language/cwltool.git Path: cwltool/schemas/v1.0/v1.0/env-wf3.cwl Branch/Commit ID: 4642316a30a95d4f3d135c18f98477886b160094
	Bacterial Annotation, pass 1, genemark training, by HMMs (first pass)	https://github.com/ncbi/pgap.git Path: bacterial_annot/wf_bacterial_annot_pass1.cwl Branch/Commit ID: ea8c2aea64cab2241e02f4cb60ca9ca7593dfa58