Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	Generate genome index bowtie Workflow makes indices for [bowtie](http://bowtie-bio.sourceforge.net/tutorial.shtml) v1.2.0 (12/30/2016). Executes `bowtie-index` to generate indices requires genome [FASTA](http://zhanglab.ccmb.med.umich.edu/FASTA/) file as input, returns results as a directory	https://github.com/datirium/workflows.git Path: workflows/bowtie-index.cwl Branch/Commit ID: c602e3cdd72ff904dd54d46ba2b5146eb1c57022
	xenbase-fastq-bowtie-bigwig-se-pe.cwl	https://github.com/datirium/workflows.git Path: subworkflows/xenbase-fastq-bowtie-bigwig-se-pe.cwl Branch/Commit ID: 9b4dc225c537685b9c9a32d931d3892d20953dd7
	merge and annotate svs with population allele freq	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/merge_svs.cwl Branch/Commit ID: e0b3c76e38630fb6234414b5adebfb6a4fb23117
	count-lines9-wf.cwl	https://github.com/common-workflow-language/cwltool.git Path: cwltool/schemas/v1.0/v1.0/count-lines9-wf.cwl Branch/Commit ID: 0e98de8f692bb7b9626ed44af835051750ac20cd
	03-map-pe.cwl ATAC-seq 03 mapping - reads: PE	https://github.com/alexbarrera/GGR-cwl.git Path: v1.0/ATAC-seq_pipeline/03-map-pe.cwl Branch/Commit ID: 0c7a51100908034e82ac008ac206d94ff8b011cd
	integrity.cwl	https://github.com/NCI-GDC/gdc-dnaseq-cwl.git Path: workflows/mirnaseq/integrity.cwl Branch/Commit ID: 0d3fdddeae5a398e476d91aa98766965866d8eae
	sum-wf.cwl	https://github.com/common-workflow-language/cwltool.git Path: cwltool/schemas/v1.0/v1.0/sum-wf.cwl Branch/Commit ID: ec2cf2da6c31ffedf827a0fb213b5204e172f510
	02-trim-se.cwl ChIP-seq 02 trimming - reads: SE	https://github.com/Duke-GCB/GGR-cwl.git Path: v1.0/ChIP-seq_pipeline/02-trim-se.cwl Branch/Commit ID: c50b80e9b0eaaf4613f9feca44b3463bbfd288d5
	rnaseq-header.cwl	https://github.com/datirium/workflows.git Path: metadata/rnaseq-header.cwl Branch/Commit ID: a1b3ab820f837d82499d91d79c89e0e0517de3b8
	Non-Coding Bacterial Genes	https://github.com/ncbi/pgap.git Path: bacterial_noncoding/wf_bacterial_noncoding.cwl Branch/Commit ID: 7edbf07405191db65a913e311a7f2260b076d36c