Explore Workflows

This is a very simple workflow of two steps. It will zip an input VCF file and then index it. The zipped file and the index file will be in the workflow output.

https://github.com/ICGC-TCGA-PanCancer/pcawg-oxog-filter.git

Path: zip_and_index_vcf.cwl

Branch/Commit ID: develop

https://github.com/KBNLresearch/ochre.git

Path: ochre/cwl/word-mapping-test-files-wf.cwl

Branch/Commit ID: master

Packed ID: align-texts-wf.cwl

https://github.com/bcbio/bcbio_validation_workflows.git

Path: somatic-giab-mix/somatic-giab-mix-workflow/main-somatic-giab-mix.cwl

Branch/Commit ID: master

https://github.com/Chi-CRL/cwl_check_workflow.git

Path: rhapsody_pipeline_2.0.cwl

Branch/Commit ID: main

Packed ID: VDJ_Preprocess_Reads.cwl

https://github.com/common-workflow-language/workflows.git

Path: workflows/GATK/GATK-Sub-Workflow-h3abionet-snp.cwl

Branch/Commit ID: h3abionet-gatk-workflow

https://github.com/hubmapconsortium/sc-atac-seq-pipeline.git

Path: create_snap_and_analyze.cwl

Branch/Commit ID: v1.0

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: tools/SSU-from-tablehits.cwl

Branch/Commit ID: 708fd97

DNase-seq 01 mapping - reads: SE

https://github.com/alexbarrera/GGR-cwl.git

Path: v1.0/DNase-seq_pipeline/01-map-se.cwl

Branch/Commit ID: master

https://github.com/GeorgeAlehandro/cwl_1_11.git

Path: workflow1_11.cwl

Branch/Commit ID: main

Packed ID: VDJ_Assemble_and_Annotate_Contigs_TCR.cwl

https://github.com/vdikan/cwl-gk-thermal.git

Path: cwl/gk-run-siesta-snapshot.cwl

Branch/Commit ID: master