Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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Transcripts annotation workflow
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https://github.com/hmenager/workflow-is-cwl.git
Path: workflows/TranscriptsAnnotation-wf.cwl Branch/Commit ID: b1649c916f1ee31b62c1eba254e05d1a8c50c901 |
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bams2gvcf.wBQSR.cwl
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https://github.com/ddbj/human-reseq.git
Path: Workflows/bams2gvcf.wBQSR.cwl Branch/Commit ID: a670d65837cc8f306096b5e5fde909192ba095ca |
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Non-Coding Bacterial Genes
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https://github.com/ncbi/pgap.git
Path: bacterial_noncoding/wf_bacterial_noncoding.cwl Branch/Commit ID: 546742b523ce12f6246a52c838a51920a08dad4b |
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fastqSE2bam.cwl
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https://github.com/ddbj/human-reseq.git
Path: Workflows/fastqSE2bam.cwl Branch/Commit ID: a670d65837cc8f306096b5e5fde909192ba095ca |
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varscan somatic workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/varscan.cwl Branch/Commit ID: efbbe5ed51f6ac583e87a348785c72818a33f56e |
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spurious_annot
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https://github.com/ncbi/pgap.git
Path: spurious_annot/wf_spurious_annot_pass1.cwl Branch/Commit ID: aa64bf6a90e0780ab564de865dbb027df98c0a01 |
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Build Bowtie indices
Workflow runs [Bowtie](http://bowtie-bio.sourceforge.net/tutorial.shtml) v1.2.0 (12/30/2016) to build indices for reference genome provided in a single FASTA file as fasta_file input. Generated indices are saved in a folder with the name that corresponds to the input genome |
https://github.com/datirium/workflows.git
Path: workflows/bowtie-index.cwl Branch/Commit ID: 4f48ee6f8665a34cdf96e89c012ee807f80c7a3d |
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Add snv and indel bam-readcount files to a vcf
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/vcf_readcount_annotator.cwl Branch/Commit ID: 449bc7e45bb02316d040f73838ef18359e770268 |
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Hello World
Puts a message into a file using echo |
https://github.com/common-workflow-language/cwlviewer.git
Path: src/test/resources/cwl/hello/hello.cwl Branch/Commit ID: d522c1e2e1f2595bb584a131b08ff660d05650ab Packed ID: main |
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Filter Protein Seeds I; Find ProSplign Alignments I
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https://github.com/ncbi/pgap.git
Path: protein_alignment/wf_compart_filter_prosplign.cwl Branch/Commit ID: 546742b523ce12f6246a52c838a51920a08dad4b |
