Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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chksum_seqval_wf_interleaved_fq.cwl
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https://github.com/cancerit/workflow-seq-import.git
Path: cwls/chksum_seqval_wf_interleaved_fq.cwl Branch/Commit ID: 0.2.1 |
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word-mapping-test-files-wf.cwl#align-texts-wf.cwl
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https://github.com/KBNLresearch/ochre.git
Path: ochre/cwl/word-mapping-test-files-wf.cwl Branch/Commit ID: master Packed ID: align-texts-wf.cwl |
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Transcripts annotation workflow
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https://github.com/stain/workflow-is-cwl.git
Path: workflows/TranscriptsAnnotation-i5only-wf.cwl Branch/Commit ID: avoid-spaces |
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Functional analyis of sequences that match the 16S SSU
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https://github.com/EBI-Metagenomics/ebi-metagenomics-cwl.git
Path: workflows/16S_taxonomic_analysis.cwl Branch/Commit ID: 3f85843 |
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gatk4.2.4.1_mutect2_workflow.cwl
GATK4.2.4.1 Mutect2 workflow |
https://github.com/nci-gdc/gatk4_mutect2_cwl.git
Path: subworkflows/gatk4.2.4.1_mutect2_workflow.cwl Branch/Commit ID: master |
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analysis for assembled sequences
rna / protein - qc, annotation, index, abundance |
https://github.com/MG-RAST/pipeline.git
Path: CWL/Workflows/assembled.workflow.cwl Branch/Commit ID: master |
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search.cwl#main
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https://github.com/common-workflow-language/cwl-v1.2.git
Path: tests/search.cwl Branch/Commit ID: main Packed ID: main |
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count-lines2-wf.cwl
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https://github.com/common-workflow-language/cwl-v1.1.git
Path: tests/count-lines2-wf.cwl Branch/Commit ID: master |
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Ambarish_Kumar_SOP-GATK-SAR-CoV-2.cwl
Author: AMBARISH KUMAR er.ambarish@gmail.com & ambari73_sit@jnu.ac.in This is a proposed standard operating procedure for genomic variant detection using GATK4. It is hoped to be effective and useful for getting SARS-CoV-2 genome variants. It uses Illumina RNASEQ reads and genome sequence. |
https://github.com/mr-c/2020-covid-19-bh-viz.git
Path: Ambarish_Kumar_SOP/Ambarish_Kumar_SOP-GATK-SAR-CoV-2.cwl Branch/Commit ID: main |
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Exome QC workflow
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https://github.com/litd/analysis-workflows.git
Path: definitions/subworkflows/qc_exome.cwl Branch/Commit ID: master |
