Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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exome alignment with qc
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https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/exome_alignment.cwl Branch/Commit ID: 18600518ce6539a2e29c1707392a4c5da5687fa3 |
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exome alignment with qc
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https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/exome_alignment.cwl Branch/Commit ID: a93be3183c2218ee50f13ae2675dd1cde563fdbc |
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etl.cwl
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https://github.com/NCI-GDC/gdc-dnaseq-cwl.git
Path: workflows/bamfastq_align/etl.cwl Branch/Commit ID: 17823fcd036d134df803fbf76e23b0bc5eabedfd |
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rnaseq-header.cwl
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https://github.com/datirium/workflows.git
Path: metadata/rnaseq-header.cwl Branch/Commit ID: 948bc3e211ce14bcdaf4f026d3695d16f423ca4a |
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scatter-valuefrom-wf1.cwl
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https://github.com/common-workflow-language/cwltool.git
Path: cwltool/schemas/v1.0/v1.0/scatter-valuefrom-wf1.cwl Branch/Commit ID: 47435d7bfa0240b799acb8e1e8f6b6f8ce03c53c |
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module-2
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https://github.com/mskcc/roslin-variant.git
Path: setup/cwl/module-2.cwl Branch/Commit ID: 7a2864f5af7723657406e4f3e94f92db09ec90fc |
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contig LCA
create LCA consistant across input contigs contigs order of precedence - rRNA, single copy gene, LCA of genes |
https://github.com/MG-RAST/pipeline.git
Path: CWL/Workflows/contig-lca.workflow.cwl Branch/Commit ID: 662d424d2e433e636f46a79025325d5daaca6271 |
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Detect Variants workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/detect_variants_mouse.cwl Branch/Commit ID: a93be3183c2218ee50f13ae2675dd1cde563fdbc |
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exome alignment with qc, no bqsr, no verify_bam_id
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https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/exome_alignment_mouse.cwl Branch/Commit ID: a93be3183c2218ee50f13ae2675dd1cde563fdbc |
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mutect parallel workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/mutect.cwl Branch/Commit ID: a93be3183c2218ee50f13ae2675dd1cde563fdbc |
