Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph icdar2017st-extract-data-all.cwl#icdar2017st-extract-data.cwl

https://github.com/KBNLresearch/ochre.git

Path: ochre/cwl/icdar2017st-extract-data-all.cwl

Branch/Commit ID: 66e1aecc1ed94e00c03c4d8d9e18ddb4bc3e6d2e

Packed ID: icdar2017st-extract-data.cwl
workflow graph echo-wc.workflowstep.cwl

https://github.com/NLeSC/scriptcwl.git

Path: tests/data/echo-wc.workflowstep.cwl

Branch/Commit ID: 12721927656e28fc90b9179f206d2ec8d53850c6
workflow graph pre_assembly.cwl

https://github.com/EBI-Metagenomics/CWL-assembly.git

Path: cwl/wrapper/pre_assembly.cwl

Branch/Commit ID: ed2dfc3eaf01e06bc67413496a26c85e3511276e
workflow graph transform.cwl

https://github.com/NCI-GDC/gdc-dnaseq-cwl.git

Path: workflows/dnaseq/validate/transform.cwl

Branch/Commit ID: 0c1a40ea1efb1656644ccec0b7abe659539340e7
workflow graph etl_http.cwl

https://github.com/NCI-GDC/gdc-dnaseq-cwl.git

Path: workflows/dnaseq/etl_http.cwl

Branch/Commit ID: 0c1a40ea1efb1656644ccec0b7abe659539340e7
workflow graph qiime2 DADA2 detect/correct paired sequence data

Option 1: DADA2 from https://docs.qiime2.org/2018.4/tutorials/moving-pictures/

 https://github.com/Duke-GCB/bespin-cwl.git

Path: packed/qiime2-step2-dada2-paired.cwl

Branch/Commit ID: 777dbcd05b5d115371dcda6d54ebaf75dae8afb8

Packed ID: qiime2-03-dada2-paired.cwl
workflow graph etl.cwl

https://github.com/nci-gdc/gdc-dnaseq-cwl.git

Path: workflows/fastq_readgroup_stats/etl.cwl

Branch/Commit ID: 0c1a40ea1efb1656644ccec0b7abe659539340e7
workflow graph exomeseq-gatk4-01-preprocessing.cwl

https://github.com/Duke-GCB/bespin-cwl.git

Path: subworkflows/exomeseq-gatk4-01-preprocessing.cwl

Branch/Commit ID: e82f3a71183048dd6700ec6725ee526ac1a95238
workflow graph extract_readgroups_bam_http.cwl

https://github.com/NCI-GDC/gdc-dnaseq-cwl.git

Path: workflows/bamfastq_align/extract_readgroups_bam_http.cwl

Branch/Commit ID: 0c1a40ea1efb1656644ccec0b7abe659539340e7
workflow graph QIIME2 Step 2 (DADA2 option)

QIIME2 DADA2, feature summaries, phylogenetic diversity tree, taxonomic analysis and ancom

https://github.com/Duke-GCB/bespin-cwl.git

Path: packed/qiime2-step2-dada2-paired.cwl

Branch/Commit ID: 777dbcd05b5d115371dcda6d54ebaf75dae8afb8

Packed ID: main