Explore Workflows

https://github.com/common-workflow-language/common-workflow-language.git

Path: v1.0/v1.0/scatter-valuefrom-wf2.cwl

Branch/Commit ID: e50522128629d5f6e93b281859c70fdd1796d3f5

https://github.com/agonopol/tara-ocean-analysis.git

Path: protein-search.cwl

Branch/Commit ID: a8325b3d3bcda63c96ac1737029284d5b371fa57

Replace named entities in a directory of text files. Can be used as part of an data anonymization workflow.

https://github.com/WhatWorksWhenForWhom/nlppln.git

Path: nlppln/cwl/anonymize.cwl

Branch/Commit ID: 197b76f936e652b0e20d98537cd362c118376141

Counts words of a message via echo and wc

https://github.com/NLeSC/scriptcwl.git

Path: tests/data/workflows/echo-wc.cwl

Branch/Commit ID: 12721927656e28fc90b9179f206d2ec8d53850c6

https://github.com/KBNLresearch/ochre.git

Path: ochre/cwl/icdar2017st-extract-data-all.cwl

Branch/Commit ID: 66e1aecc1ed94e00c03c4d8d9e18ddb4bc3e6d2e

Packed ID: icdar2017st-extract-data.cwl

https://github.com/NLeSC/scriptcwl.git

Path: tests/data/echo-wc.workflowstep.cwl

Branch/Commit ID: 12721927656e28fc90b9179f206d2ec8d53850c6

https://github.com/EBI-Metagenomics/CWL-assembly.git

Path: cwl/wrapper/pre_assembly.cwl

Branch/Commit ID: ed2dfc3eaf01e06bc67413496a26c85e3511276e

https://github.com/NCI-GDC/gdc-dnaseq-cwl.git

Path: workflows/dnaseq/validate/transform.cwl

Branch/Commit ID: 0c1a40ea1efb1656644ccec0b7abe659539340e7

https://github.com/NCI-GDC/gdc-dnaseq-cwl.git

Path: workflows/dnaseq/etl_http.cwl

Branch/Commit ID: 0c1a40ea1efb1656644ccec0b7abe659539340e7

Option 1: DADA2 from https://docs.qiime2.org/2018.4/tutorials/moving-pictures/

https://github.com/Duke-GCB/bespin-cwl.git

Path: packed/qiime2-step2-dada2-paired.cwl

Branch/Commit ID: 777dbcd05b5d115371dcda6d54ebaf75dae8afb8

Packed ID: qiime2-03-dada2-paired.cwl