Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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basic.cwl
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https://github.com/ljdursi/cwl-tutorial.git
Path: cl-tools/workflow/basic.cwl Branch/Commit ID: master |
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htseq_count_workflow.cwl
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https://github.com/nci-gdc/htseq-cwl.git
Path: workflows/htseq_count_workflow.cwl Branch/Commit ID: master |
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scRNA-seq pipeline using Salmon and Alevin
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https://github.com/hubmapconsortium/salmon-rnaseq.git
Path: pipeline.cwl Branch/Commit ID: release |
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811-12.cwl
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https://github.com/common-workflow-language/cwltool.git
Path: tests/wf/811-12.cwl Branch/Commit ID: 6b1b15c0c54846d8e765893f0931b97410263e10 |
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scatter-wf3.cwl#main
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https://github.com/common-workflow-language/cwl-v1.2.git
Path: tests/scatter-wf3.cwl Branch/Commit ID: main Packed ID: main |
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pipeline-bam2vcf-distr.cwl
DNAseq pipeline from bam to vcf in distributed mode |
https://github.com/Sentieon/Sentieon-cwl.git
Path: pipeline/pipeline-bam2vcf-distr.cwl Branch/Commit ID: master |
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RSeQC workflow or single-end samples
This workflow runs the RSeQC quality control workflow |
https://github.com/ncbi/cwl-ngs-workflows-cbb.git
Path: workflows/RSeQC/rseqc-bam-qc-SE.cwl Branch/Commit ID: master |
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SAMSA2 pipeline
SAMSA2 complete workflow for meta-omics read annotation Steps: - Diamond read blastx - Refseq - SEED - SAMSA2 processing |
https://git.wur.nl/unlock/cwl.git
Path: cwl/workflows/workflow_samsa2.cwl Branch/Commit ID: master |
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rnaseq-alignment-circRNA-multiple-samples
This workflow aligns multiple samples using STAR for paired-end samples to be used in circRNA pipeline |
https://github.com/ncbi/cwl-ngs-workflows-cbb.git
Path: workflows/Alignments/star-alignment-circRNA-multiple-samples-default.cwl Branch/Commit ID: master |
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CODEX analysis pipeline using Cytokit
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https://github.com/hubmapconsortium/codex-pipeline.git
Path: pipeline.cwl Branch/Commit ID: 221f7c4 |
