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Showing results for "rnaseq" (Show all)
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rnaseq-alignment-circRNA-multiple-samples
This workflow aligns multiple samples using STAR for paired-end samples to be used in circRNA pipeline |
https://github.com/ncbi/cwl-ngs-workflows-cbb.git
Path: workflows/Alignments/star-alignment-circRNA-multiple-samples.cwl Branch/Commit ID: e1c19e64f6fc210f65472ee227786d33c9b4909a |
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Workflow to run pVACseq from detect_variants and rnaseq pipeline outputs
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/pvacseq.cwl Branch/Commit ID: 0d2f354af9192a56af258a7d2426c7c160f4ec1a |
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trim-rnaseq-pe-dutp.cwl
Runs RNA-Seq BioWardrobe basic analysis with strand specific pair-end data file. |
https://github.com/datirium/workflows.git
Path: workflows/trim-rnaseq-pe-dutp.cwl Branch/Commit ID: 4b8bb1a1ec39056253ca8eee976078e51f4a954e |
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rnaseq-se.cwl
Runs RNA-Seq BioWardrobe basic analysis with single-end data file. |
https://github.com/Barski-lab/workflows.git
Path: workflows/rnaseq-se.cwl Branch/Commit ID: 144eee15187c1a1145ce1ee0239da69059fd2752 |
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rnaseq-pe.cwl
Runs RNA-Seq BioWardrobe basic analysis with pair-end data file. |
https://github.com/Barski-lab/workflows.git
Path: workflows/rnaseq-pe.cwl Branch/Commit ID: 94c6ea7bf4b64599746d778568efbd8e10f0d5ba |
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trim-rnaseq-se-dutp.cwl
Runs RNA-Seq dUTP BioWardrobe basic analysis with strand specific single-end data file. |
https://github.com/datirium/workflows.git
Path: workflows/trim-rnaseq-se-dutp.cwl Branch/Commit ID: cb5e5b8563be4977e9f2babc14fe084faa234847 |
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rnaseq-header.cwl
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https://github.com/datirium/workflows.git
Path: metadata/rnaseq-header.cwl Branch/Commit ID: 675a3ff982091faf304931e9261aacdbabf51702 |
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Workflow to run pVACseq from detect_variants and rnaseq pipeline outputs
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https://github.com/fgomez02/analysis-workflows.git
Path: definitions/pipelines/pvacseq.cwl Branch/Commit ID: No_filters_detect_variants |
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rnaseq-se.cwl
Runs RNA-Seq BioWardrobe basic analysis with single-end data file. |
https://github.com/Barski-lab/workflows.git
Path: workflows/rnaseq-se.cwl Branch/Commit ID: dc4ee45ed2c5c30e9a1a173c9ea4445f27d3788a |
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rnaseq-alignment-circRNA-multiple-samples
This workflow aligns multiple samples using STAR for paired-end samples to be used in circRNA pipeline |
https://github.com/ncbi/cwl-ngs-workflows-cbb.git
Path: workflows/Alignments/star-alignment-circRNA-multiple-samples-default.cwl Branch/Commit ID: master |
